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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Coumarin resistance Large cell carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
CYP2A6(2)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. Cluster 294 →
Cryohydrocytosis Hereditary xerocytosis
1 gene
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1 of 1 corroborated by 2+ sources
SLC4A1(5)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. —
Capillary malformation Cutis marmorata telangiectatica congenita
1 gene
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1 of 1 corroborated by 2+ sources
GNA11(2)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. Cluster 40 →
Congenital lipomatous overgrowth, vascular malformations, and epidermal nevi Cutis marmorata telangiectatica congenita
1 gene
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1 of 1 corroborated by 2+ sources
GNA11(2)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. Cluster 40 →
Cutis marmorata telangiectatica congenita Hypocalciuric hypercalcemia
1 gene
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1 of 1 corroborated by 2+ sources
GNA11(6)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. —
Cystathionine beta-synthase deficiency Ventricular hypertrophy
1 gene
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PKHD1(1)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. Cluster 157 →
autosomal recessive polycystic kidney disease Cystathionine beta-synthase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
PKHD1(2)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. Cluster 157 →
Deafness, aminoglycoside-induced Infantile liver failure
1 gene
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1 of 1 corroborated by 2+ sources
TRMU(4)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. —
Deafness, dystonia, and cerebral hypomyelination Encephalitis
1 gene
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ABCD1(1)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. —
Dermatosparaxis ehlers-danlos syndrome Geleophysic dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. Cluster 52 →
14q11.2 microduplication syndrome Intellectual developmental disorder autism dysmorphic
1 gene
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1 of 1 corroborated by 2+ sources
CHD8(5)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. Cluster 279 →
17p11.2 microduplication syndrome Smith-magenis syndrome
1 gene
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1 of 1 corroborated by 2+ sources
RAI1(7)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. Cluster 347 →
17q12 microdeletion syndrome Renal cysts and diabetes syndrome
1 gene
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1 of 1 corroborated by 2+ sources
HNF1B(7)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. Cluster 23 →
1p36.33 duplication syndrome Ocular anomalies with axonal neuropathy and developmental delay
1 gene
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1 of 1 corroborated by 2+ sources
ATAD3A(2)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. —
Acne inversa Early onset alzheimers disease with behavioral disturbance
1 gene
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1 of 1 corroborated by 2+ sources
PSEN1(2)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. Cluster 116 →
Acrocallosal syndrome White sutton syndrome
1 gene
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GLI3(1)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. Cluster 142 →
Adrenoleukodystrophy Encephalitis
1 gene
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1 of 1 corroborated by 2+ sources
ABCD1(4)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. —
Alagille syndrome Corneal opacity
1 gene
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1 of 1 corroborated by 2+ sources
JAG1(2)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. Cluster 356 →
Alpha-1 antichymotrypsin deficiency Rh deficiency syndrome
1 gene
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1 of 1 corroborated by 2+ sources
RHD(3)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. Cluster 302 →
Anastomosing haemangioma Cutis marmorata telangiectatica congenita
1 gene
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1 of 1 corroborated by 2+ sources
GNA11(2)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. Cluster 40 →
Anastomosing haemangioma Port-wine stain
1 gene
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1 of 1 corroborated by 2+ sources
GNAQ(3)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. Cluster 40 →
Activated pi3k-delta syndrome Anisometropia
1 gene
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1 of 1 corroborated by 2+ sources
PTEN(2)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. —
Anisometropia Retinal vasculopathy with cerebral leukodystrophy
1 gene
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1 of 1 corroborated by 2+ sources
PTEN(2)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. —
Annular epidermolytic ichthyosis Epidermolytic palmoplantar keratoderma
1 gene
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1 of 1 corroborated by 2+ sources
KRT1(2)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. Cluster 230 →
Antithrombin deficiency Pyogenic arthritis-pyoderma gangrenosum-acne syndrome
1 gene
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1 of 1 corroborated by 2+ sources
IL1B(2)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.