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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Bone marrow neoplasms Hepatic veno occlusive disease
1 gene
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1 of 1 corroborated by 2+ sources
CSF3(2)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. —
Bone marrow neoplasms Leiomyosarcoma
1 gene
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CSF3(1)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. —
Bonnevie-ullrich syndrome Esophageal stenosis
1 gene
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1 of 1 corroborated by 2+ sources
SOD2(2)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. —
Benign hereditary chorea Brain-lung-thyroid syndrome
1 gene
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1 of 1 corroborated by 2+ sources
NKX2-1(4)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. —
Brainstem atrophy Mucolipidosis
1 gene
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1 of 1 corroborated by 2+ sources
MCOLN1(7)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. Cluster 91 →
Branched-chain keto acid dehydrogenase kinase deficiency Maple syrup urine disease
1 gene
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1 of 1 corroborated by 2+ sources
BCKDK(5)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. —
Asymmetric crying face association Branchiootorenal syndrome
1 gene
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1 of 1 corroborated by 2+ sources
EYA1(5)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. Cluster 145 →
Acro-dermo-ungual-lacrimal-tooth syndrome Breast disease
1 gene
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1 of 1 corroborated by 2+ sources
TP63(3)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. Cluster 27 →
Ankyloblepharon-ectodermal defects-cleft lip/palate Breast disease
1 gene
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1 of 1 corroborated by 2+ sources
TP63(6)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. Cluster 27 →
Breast disease Limb-mammary syndrome
1 gene
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1 of 1 corroborated by 2+ sources
TP63(5)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. Cluster 27 →
Brown oculocutaneous albinism Skin hair eye pigmentation variation
1 gene
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1 of 1 corroborated by 2+ sources
OCA2(2)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. —
Brunner syndrome Dysthymic disorder
1 gene
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1 of 1 corroborated by 2+ sources
MAOA(5)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. —
C9 deficiency Terminal complement component deficiency
1 gene
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1 of 1 corroborated by 2+ sources
C9(2)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. Cluster 383 →
Carcinoid syndrome hereditary pheochromocytoma-paraganglioma
1 gene
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1 of 1 corroborated by 2+ sources
SDHD(2)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. Cluster 81 →
Cardiac-urogenital syndrome Dextrocardia
1 gene
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1 of 1 corroborated by 2+ sources
MYRF(6)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. Cluster 46 →
cardiomyopathy, dilated, 2l Distal muscular dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
LDB3(2)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. —
Carotid intima-media thickness Generalized lipodystrophy
1 gene
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PPARG(1)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. Cluster 71 →
Carotid intima-media thickness Follicular thyroid cancer
1 gene
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1 of 1 corroborated by 2+ sources
PPARG(2)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. —
Castleman disease Prediabetes
1 gene
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1 of 1 corroborated by 2+ sources
IL6(2)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. —
Coronary aneurysm Eating disorder
3 genes
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CAMK1D(1), CSMD1(1), MACROD2(1)
0.029 0.094 4.41e-4 9.73e-4 ✓ sig. —
Atypical femoral fracture Vertebral column disorder
2 genes
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CSMD1(1), CHST3(1)
0.041 0.154 4.31e-4 9.58e-4 ✓ sig. —
Hereditary parkinson disease Substance-induced psychosis
2 genes
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2 of 2 corroborated by 2+ sources
GSTP1(2), SNCA(3)
0.045 0.118 4.26e-4 9.47e-4 ✓ sig. —
Chondromalacia Myositis
2 genes
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SLC6A15(1), DLGAP1(1)
0.029 0.250 4.26e-4 9.46e-4 ✓ sig. —
Bell's palsy Essential tremor
4 genes
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CDC5L(1), SUPT3H(1), SFTA2(1), TTC23(1)
0.027 0.071 4.23e-4 9.40e-4 ✓ sig. —
Cervical polyp Nonalcoholic fatty liver disease
2 genes
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IRAK1BP1(1), MEI4(1)
0.006 1.000 4.20e-4 9.33e-4 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.