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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
atransferrinemia Iron overload
1 gene
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1 of 1 corroborated by 2+ sources
TF(3)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. —
Atrial myxoma Carney complex
1 gene
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1 of 1 corroborated by 2+ sources
PRKAR1A(8)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. —
Atrophia bulborum heritaria Exudative retinopathy
1 gene
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1 of 1 corroborated by 2+ sources
NDP(2)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. —
Atrophic retina Mandibulofacial dysostosis
1 gene
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ABCA4(1)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. —
Autism-epilepsy syndrome Maple syrup urine disease
1 gene
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1 of 1 corroborated by 2+ sources
BCKDK(2)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. —
autosomal dominant centronuclear myopathy Congenital deformity of clavicle
1 gene
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1 of 1 corroborated by 2+ sources
DNM2(2)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. Cluster 59 →
autosomal dominant centronuclear myopathy Congenital deformity of elbow
1 gene
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1 of 1 corroborated by 2+ sources
DNM2(2)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. Cluster 59 →
autosomal dominant centronuclear myopathy Congenital deformity of forearm
1 gene
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1 of 1 corroborated by 2+ sources
DNM2(2)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. Cluster 59 →
autosomal dominant centronuclear myopathy Congenital deformity of scapula
1 gene
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1 of 1 corroborated by 2+ sources
DNM2(2)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. Cluster 59 →
autosomal dominant polycystic kidney disease Liver cyst
1 gene
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1 of 1 corroborated by 2+ sources
PKD1(2)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. —
autosomal dominant polycystic kidney disease IFT140-related recessive ciliopathy
1 gene
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IFT140(1)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. Cluster 374 →
autosomal dominant polycystic kidney disease renal-hepatic-pancreatic dysplasia 2
1 gene
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NEK8(1)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. Cluster 374 →
autosomal recessive osteopetrosis 2 Osteolysis
1 gene
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1 of 1 corroborated by 2+ sources
TNFSF11(2)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. Cluster 262 →
autosomal recessive spinocerebellar ataxia 10 Central nervous system non-hodgkin lymphoma
1 gene
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1 of 1 corroborated by 2+ sources
ANO10(2)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. —
Axonal hereditary motor and sensory neuropathy Hereditary motor and sensory neuropathy
1 gene
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1 of 1 corroborated by 2+ sources
MFN2(5)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. Cluster 207 →
bamforth-lazarus syndrome Nonmedullary thyroid cancer
1 gene
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1 of 1 corroborated by 2+ sources
FOXE1(3)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. Cluster 18 →
BAP1-related tumor predisposition syndrome Testicular neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
BAP1(2)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. Cluster 389 →
Behavior disorders Dysthymic disorder
1 gene
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SLC6A4(1)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. Cluster 156 →
Benign congenital myopathy Leiomyosarcoma
1 gene
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1 of 1 corroborated by 2+ sources
DMD(2)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. Cluster 213 →
Benign mesial temporal lobe epilepsy Familial temporal lobe epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
CPA6(4)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. —
Benta disease Congenital cardiovascular anomaly
1 gene
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1 of 1 corroborated by 2+ sources
CARD11(4)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. Cluster 327 →
Beta-propeller protein-associated neurodegeneration Hallervorden spatz syndrome
1 gene
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1 of 1 corroborated by 2+ sources
WDR45(2)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. —
Beta-sarcoglycanopathy Mucolipidosis
1 gene
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1 of 1 corroborated by 2+ sources
SGCB(2)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. Cluster 91 →
immunodeficiency 121 with autoinflammation Proteasome associated autoinflammatory syndrome
1 gene
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1 of 1 corroborated by 2+ sources
PSMB10(5)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. —
Central nervous system non-hodgkin lymphoma immunodeficiency 60
1 gene
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1 of 1 corroborated by 2+ sources
BACH2(2)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. Cluster 1 →

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.