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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Choroidal neovascularization Urologic neoplasms
1 gene
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VEGFA(1)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —
Chromosomal instability microcephaly with or without chorioretinopathy, lymphedema, or intellectual disability
1 gene
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1 of 1 corroborated by 2+ sources
KIF11(2)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —
Chromosome 16p13.3 deletion syndrome Rubinstein-taybi syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CREBBP(7)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. Cluster 249 →
Chromosome 22q11.2 deletion syndrome Hyperammonemia
1 gene
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ABCA3(1)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. Cluster 408 →
Chuvash erythrocytosis Secondary polycythemia
1 gene
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1 of 1 corroborated by 2+ sources
VHL(4)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —
Citrin deficiency Urea cycle disorder
1 gene
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1 of 1 corroborated by 2+ sources
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. Cluster 367 →
Cleft palate proliferative retinopathy developmental delay Vitreoretinal degeneration
1 gene
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1 of 1 corroborated by 2+ sources
LRRC32(3)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —
Hoyeraal hreidarsson syndrome Revesz debuse syndrome
1 gene
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1 of 1 corroborated by 2+ sources
TINF2(3)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —
Hoyeraal hreidarsson syndrome Revesz syndrome
1 gene
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1 of 1 corroborated by 2+ sources
TINF2(5)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —
Rhabdomyolysis Ventricular outflow obstruction
1 gene
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1 of 1 corroborated by 2+ sources
INS(2)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —
Double outlet right ventricle Right isomerism
1 gene
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1 of 1 corroborated by 2+ sources
GDF1(3)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. Cluster 113 →
Robinow syndrome Sweeney-cox syndrome
1 gene
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1 of 1 corroborated by 2+ sources
TWIST1(5)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. Cluster 127 →
Robinow syndrome TWIST1-related craniosynostosis
1 gene
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1 of 1 corroborated by 2+ sources
TWIST1(5)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. Cluster 127 →
Congenital nystagmus RPE65-related dominant retinopathy
1 gene
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1 of 1 corroborated by 2+ sources
RPE65(2)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —
Congenital nystagmus RPE65-related recessive retinopathy
1 gene
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1 of 1 corroborated by 2+ sources
RPE65(2)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —
Osteosclerosis Sanjad-sakati syndrome
1 gene
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1 of 1 corroborated by 2+ sources
TBCE(3)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. Cluster 108 →
Penile hypospadia Schinzel-Giedion syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SETBP1(2)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —
Metaphyseal chondrodysplasia Schmid metaphyseal chondrodysplasia
1 gene
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1 of 1 corroborated by 2+ sources
COL10A1(6)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —
Hoyeraal hreidarsson syndrome Short telomere syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ACD(4)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. Cluster 64 →
snowflake vitreoretinal degeneration Vitreoretinal degeneration
1 gene
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1 of 1 corroborated by 2+ sources
KCNJ13(2)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —
Charcot-marie-tooth disease, x-linked Spastic ataxia of charlevoix-saguenay
1 gene
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1 of 1 corroborated by 2+ sources
SACS(2)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —
Acro-dermo-ungual-lacrimal-tooth syndrome Split hand-foot malformation
1 gene
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1 of 1 corroborated by 2+ sources
TP63(5)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —
Ankyloblepharon-ectodermal defects-cleft lip/palate Split hand-foot malformation
1 gene
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1 of 1 corroborated by 2+ sources
TP63(6)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —
Limb-mammary syndrome Split hand-foot malformation
1 gene
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1 of 1 corroborated by 2+ sources
TP63(5)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —
Rudiger syndrome Split hand-foot malformation
1 gene
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1 of 1 corroborated by 2+ sources
TP63(5)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.