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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Hemophagocytic lymphohistiocytosis X-linked scapuloperoneal muscular dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
FHL1(4)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —
Hereditary chronic pancreatitis neonatal severe primary hyperparathyroidism
1 gene
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1 of 1 corroborated by 2+ sources
CASR(2)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —
hereditary leiomyomatosis and renal cell cancer Pheochromocytoma/paraganglioma syndrome
1 gene
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1 of 1 corroborated by 2+ sources
FH(2)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —
CHEK2-related cancer predisposition hereditary nonpolyposis colon cancer
1 gene
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CHEK2(1)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —
hereditary nonpolyposis colon cancer Small cell ovary carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
SMARCA4(2)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. Cluster 120 →
hereditary nonpolyposis colon cancer thrombocytopenia 10
1 gene
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PTPRJ(1)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. Cluster 120 →
Hydrops with lactic acidosis and sideroblastic anemia Xx gonadal dysgenesis syndrome
1 gene
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1 of 1 corroborated by 2+ sources
LARS2(5)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. Cluster 336 →
Hyperammonemia systemic lupus erythematosus, susceptibility to, 1
1 gene
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1 of 1 corroborated by 2+ sources
TLR5(3)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. Cluster 408 →
Hyperammonemia ornithine carbamoyltransferase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
OTC(3)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. Cluster 408 →
Hyperesthesia Occupational dermatitis
1 gene
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1 of 1 corroborated by 2+ sources
KNG1(2)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. Cluster 250 →
Hyperammonemia Hyperinsulinism-hyperammonemia syndrome
1 gene
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1 of 1 corroborated by 2+ sources
GLUD1(6)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —
hypopigmentation, organomegaly, and delayed myelination and development Osteosclerosis
1 gene
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1 of 1 corroborated by 2+ sources
CLCN7(2)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —
Bare lymphocyte syndrome hypoproteinemia, hypercatabolic
1 gene
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1 of 1 corroborated by 2+ sources
B2M(2)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —
Argininosuccinic aciduria Urea cycle disorder
1 gene
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1 of 1 corroborated by 2+ sources
ASL(7)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. Cluster 367 →
Arhinia-choanal atresia-microphthalmia syndrome Facial nerve disorder
1 gene
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1 of 1 corroborated by 2+ sources
SMCHD1(3)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. Cluster 313 →
Asymptomatic hyperckemia-myalgia-rhabdomyolysis syndrome Rhabdomyolysis
1 gene
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1 of 1 corroborated by 2+ sources
ANO5(2)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. Cluster 290 →
Ataxia, spastic, autosomal recessive with optic atrophy and impaired intellect Charcot-marie-tooth disease, x-linked
1 gene
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SACS(1)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —
ATF6-related retinopathy Congenital nystagmus
1 gene
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1 of 1 corroborated by 2+ sources
ATF6(2)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —
ATM-related cancer predisposition B-cell chronic lymphocytic leukemia
1 gene
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1 of 1 corroborated by 2+ sources
ATM(2)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —
atypical hemolytic-uremic syndrome with B factor anomaly C3 glomerulonephritis
1 gene
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1 of 1 corroborated by 2+ sources
CFB(3)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. Cluster 359 →
atypical hemolytic-uremic syndrome with B factor anomaly Mesangiocapillary glomerulonephritis
1 gene
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1 of 1 corroborated by 2+ sources
CFB(2)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. Cluster 359 →
atypical hemolytic-uremic syndrome with C3 anomaly C3 glomerulonephritis
1 gene
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1 of 1 corroborated by 2+ sources
C3(3)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —
atypical hemolytic-uremic syndrome with C3 anomaly Mesangiocapillary glomerulonephritis
1 gene
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1 of 1 corroborated by 2+ sources
C3(2)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —
atypical hemolytic-uremic syndrome with DGKE deficiency Mesangiocapillary glomerulonephritis
1 gene
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1 of 1 corroborated by 2+ sources
DGKE(2)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —
Auricle malformation Branchial arch abnormalities syndrome
1 gene
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1 of 1 corroborated by 2+ sources
KMT2D(3)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.