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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Cerebral microangiopathy Malignant triton tumor
1 gene
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1 of 1 corroborated by 2+ sources
HTRA1(2)
0.167 0.500 5.19e-4 1.06e-3 ✓ sig. —
Micropenis Yunis-varon syndrome
1 gene
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1 of 1 corroborated by 2+ sources
FIG4(5)
0.167 0.500 5.19e-4 1.06e-3 ✓ sig. Cluster 103 →
Mitochondrial myopathy with sideroblastic anemia Periodic paralysis
1 gene
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ATP6(1)
0.167 0.500 5.19e-4 1.06e-3 ✓ sig. Cluster 90 →
Mulibrey nanism Peripheral neuropathy, autosomal recessive, with or without impaired intellectual development
1 gene
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PNPLA7(1)
0.167 0.500 5.19e-4 1.06e-3 ✓ sig. Cluster 109 →
Hemimelia of limb Multiple synostoses syndrome
1 gene
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1 of 1 corroborated by 2+ sources
NOG(4)
0.167 0.500 5.19e-4 1.06e-3 ✓ sig. —
Liposarcoma silver-russell syndrome 5
1 gene
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1 of 1 corroborated by 2+ sources
HMGA2(2)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. Cluster 342 →
17q11.2 microduplication syndrome Liposarcoma
1 gene
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1 of 1 corroborated by 2+ sources
NF1(2)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —
Cervical lymphadenopathy Liposarcoma
1 gene
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1 of 1 corroborated by 2+ sources
NF1(2)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —
Liposarcoma Watson syndrome
1 gene
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1 of 1 corroborated by 2+ sources
NF1(2)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —
loeys-dietz syndrome 2 Ruptured abdominal aortic aneurysm
1 gene
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1 of 1 corroborated by 2+ sources
TGFBR2(2)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —
loeys-dietz syndrome 2 Ruptured aortic aneurysm
1 gene
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1 of 1 corroborated by 2+ sources
TGFBR2(2)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —
loeys-dietz syndrome 2 Ruptured thoracic aortic aneurysm
1 gene
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1 of 1 corroborated by 2+ sources
TGFBR2(2)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —
loeys-dietz syndrome 2 Thoracoabdominal aortic aneurysm
1 gene
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1 of 1 corroborated by 2+ sources
TGFBR2(2)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —
lysosomal acid lipase deficiency Niemann-pick disease
1 gene
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1 of 1 corroborated by 2+ sources
LIPA(3)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —
Double outlet right ventricle megalencephaly-polydactyly syndrome
1 gene
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1 of 1 corroborated by 2+ sources
MYCN(2)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —
Liposarcoma melanoma, cutaneous malignant, susceptibility to, 3
1 gene
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1 of 1 corroborated by 2+ sources
CDK4(3)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. Cluster 342 →
membranoproliferative glomerulonephritis Mesangiocapillary glomerulonephritis
1 gene
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1 of 1 corroborated by 2+ sources
DGKE(2)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —
Metaphyseal chondrodysplasia SF3B4-related acrofacial dysostosis
1 gene
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1 of 1 corroborated by 2+ sources
SF3B4(2)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —
Congenital pectus carinatum Metaphyseal chondrodysplasia
1 gene
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FBN1(1)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —
Coronary artery dissection Metaphyseal chondrodysplasia
1 gene
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FBN1(1)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —
Metaphyseal chondrodysplasia Metaphyseal enchondromatosis
1 gene
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1 of 1 corroborated by 2+ sources
IDH1(2)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —
microcephaly, seizures, and developmental delay Pyridoxine dependent epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
PNKP(2)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —
Middle ear cholesteatoma Pemphigus
1 gene
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IL2(1)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —
Miles-carpenter syndrome X-linked syndromic intellectual disability
1 gene
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1 of 1 corroborated by 2+ sources
ZC4H2(2)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —
Mucoepidermoid carcinoma Paraganglioma
1 gene
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BAP1(1)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.