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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Arteriovenous hemangioma juvenile polyposis syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ENG(2)
0.167 0.500 5.19e-4 1.06e-3 ✓ sig. —
Lateral temporal lobe epilepsy lissencephaly with cerebellar hypoplasia
1 gene
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1 of 1 corroborated by 2+ sources
RELN(2)
0.167 0.500 5.19e-4 1.06e-3 ✓ sig. —
Nephrotic syndrome, idiopathic, steroid-resistant Nephrotic syndrome, steroid-resistant, autosomal recessive
1 gene
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1 of 1 corroborated by 2+ sources
NPHS2(2)
0.167 0.500 5.19e-4 1.06e-3 ✓ sig. —
Basal cell nevus syndrome nevoid basal cell carcinoma syndrome
1 gene
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1 of 1 corroborated by 2+ sources
PTCH1(4)
0.167 0.500 5.19e-4 1.06e-3 ✓ sig. —
nevoid basal cell carcinoma syndrome Rieger syndrome
1 gene
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1 of 1 corroborated by 2+ sources
PTCH1(2)
0.167 0.500 5.19e-4 1.06e-3 ✓ sig. —
Bladder cancer Osteogenic sarcoma
1 gene
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RB1(1)
0.167 0.500 5.19e-4 1.06e-3 ✓ sig. —
Catel-manzke syndrome Vertebral, cardiac, renal, and limb defects syndrome
1 gene
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1 of 1 corroborated by 2+ sources
KYNU(5)
0.167 0.500 5.19e-4 1.06e-3 ✓ sig. Cluster 386 →
Bile duct calculus Cavitary optic disk anomaly
1 gene
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APOE(1)
0.167 0.500 5.19e-4 1.06e-3 ✓ sig. Cluster 177 →
Cecal neoplasms Craniopharyngioma
1 gene
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1 of 1 corroborated by 2+ sources
CTNNB1(2)
0.167 0.500 5.19e-4 1.06e-3 ✓ sig. Cluster 104 →
Cecal neoplasms Osteopathia striata with cranial sclerosis
1 gene
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1 of 1 corroborated by 2+ sources
CTNNB1(3)
0.167 0.500 5.19e-4 1.06e-3 ✓ sig. Cluster 104 →
Cecal neoplasms Vascular calcification
1 gene
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1 of 1 corroborated by 2+ sources
CTNNB1(2)
0.167 0.500 5.19e-4 1.06e-3 ✓ sig. Cluster 104 →
Central nervous system demyelinating disease Deafness enamel hypoplasia nail defects
1 gene
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1 of 1 corroborated by 2+ sources
PEX6(2)
0.167 0.500 5.19e-4 1.06e-3 ✓ sig. Cluster 219 →
Central nervous system demyelinating disease Deafness-enamel hypoplasia-nail defects syndrome
1 gene
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1 of 1 corroborated by 2+ sources
PEX6(2)
0.167 0.500 5.19e-4 1.06e-3 ✓ sig. Cluster 219 →
Cerebral cortical atrophy Childhood-onset spinal muscular atrophy
1 gene
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1 of 1 corroborated by 2+ sources
BICD2(2)
0.167 0.500 5.19e-4 1.06e-3 ✓ sig. —
Cerebral cortical atrophy Polycystic lipomembranous osteodysplasia with sclerosing leukoencephalopathy
1 gene
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1 of 1 corroborated by 2+ sources
TYROBP(5)
0.167 0.500 5.19e-4 1.06e-3 ✓ sig. Cluster 333 →
Anaplastic oligodendroglioma Cerebroretinal microangiopathy with calcifications and cysts
1 gene
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1 of 1 corroborated by 2+ sources
POT1(5)
0.167 0.500 5.19e-4 1.06e-3 ✓ sig. —
Camptocormia Chronic progressive external ophthalmoplegia
1 gene
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1 of 1 corroborated by 2+ sources
RRM2B(2)
0.167 0.500 5.19e-4 1.06e-3 ✓ sig. —
Autoimmune pancreatitis Churg-strauss syndrome
1 gene
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1 of 1 corroborated by 2+ sources
0.167 0.500 5.19e-4 1.06e-3 ✓ sig. Cluster 1 →
Churg-strauss syndrome Tongue cancer
1 gene
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0.167 0.500 5.19e-4 1.06e-3 ✓ sig. Cluster 1 →
Clear cell papillary renal cell carcinoma Hepatic adenoma
1 gene
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1 of 1 corroborated by 2+ sources
HNF1A(5)
0.167 0.500 5.19e-4 1.06e-3 ✓ sig. —
Clear cell papillary renal cell carcinoma Insulin resistant diabetes mellitus
1 gene
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1 of 1 corroborated by 2+ sources
HNF1A(2)
0.167 0.500 5.19e-4 1.06e-3 ✓ sig. —
Juvenile hyperuricemic nephropathy Liddle syndrome
1 gene
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1 of 1 corroborated by 2+ sources
REN(5)
0.167 0.500 5.19e-4 1.06e-3 ✓ sig. Cluster 95 →
Liddle syndrome Tonne-kalscheuer syndrome
1 gene
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1 of 1 corroborated by 2+ sources
REN(2)
0.167 0.500 5.19e-4 1.06e-3 ✓ sig. Cluster 95 →
Male breast neoplasms Osteogenic sarcoma
1 gene
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1 of 1 corroborated by 2+ sources
CHEK2(2)
0.167 0.500 5.19e-4 1.06e-3 ✓ sig. —
Cerebral microangiopathy Malignant peripheral nerve sheath tumor
1 gene
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1 of 1 corroborated by 2+ sources
HTRA1(2)
0.167 0.500 5.19e-4 1.06e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.