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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Chondrosarcoma Czech dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
COL2A1(3)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. Cluster 11 →
Chondrosarcoma Dysspondyloenchondromatosis
1 gene
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1 of 1 corroborated by 2+ sources
COL2A1(4)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. Cluster 11 →
Chromosome 22q11.2 deletion syndrome Pulmonary alveolar proteinosis
1 gene
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ABCA3(1)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —
ciliary dyskinesia, primary, 39 Congenital arteriovenous malformation
1 gene
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1 of 1 corroborated by 2+ sources
LRRC56(2)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. Cluster 18 →
ciliopathy-IFT74 Male infertility large polyploid spermatozoa
1 gene
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1 of 1 corroborated by 2+ sources
IFT74(3)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —
Coats disease Exudative vitreoretinopathy
1 gene
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1 of 1 corroborated by 2+ sources
NDP(5)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —
Cobalamin metabolism disorder Intracellular cobalamin metabolism disorder
1 gene
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1 of 1 corroborated by 2+ sources
MMADHC(2)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —
congenital myasthenic syndrome 17 Maffucci syndrome
1 gene
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1 of 1 corroborated by 2+ sources
LRP4(2)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —
Bone marrow failure syndromes Congenital progressive bone marrow failure-b-cell immunodeficiency-skeletal dysplasia syndrome
1 gene
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1 of 1 corroborated by 2+ sources
MYSM1(5)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. Cluster 3 →
Congenital prothrombin deficiency Disseminated intravascular coagulation
1 gene
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1 of 1 corroborated by 2+ sources
F2(5)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —
Cataract-microcornea syndrome Congenital sclerocornea
1 gene
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1 of 1 corroborated by 2+ sources
GJA8(4)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —
Congenital sensory neuropathy Corneal ulcer
1 gene
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1 of 1 corroborated by 2+ sources
NGF(3)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —
Congenital arteriovenous malformation Conn syndrome
1 gene
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CACNA1H(1)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —
Cataract-microcornea syndrome Coralliform cataract
1 gene
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1 of 1 corroborated by 2+ sources
CRYGD(3)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. Cluster 43 →
Corneal ulcer retinal dystrophy, optic nerve edema, splenomegaly, anhidrosis, and migraine headache syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ALPK1(2)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. Cluster 399 →
Craniocerebral trauma Disseminated intravascular coagulation
1 gene
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1 of 1 corroborated by 2+ sources
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —
craniosynostosis 6 Diabetic maculopathy
1 gene
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1 of 1 corroborated by 2+ sources
ZIC1(2)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —
Crigler-najjar syndrome Serum bilirubin level
1 gene
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1 of 1 corroborated by 2+ sources
UGT1A1(6)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —
Benign pemphigus De barsy syndrome
1 gene
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1 of 1 corroborated by 2+ sources
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —
Darier disease De barsy syndrome
1 gene
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1 of 1 corroborated by 2+ sources
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —
Deafness with congenital and adult-onset progressive leukodystrophy Optic neuropathy
1 gene
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1 of 1 corroborated by 2+ sources
KARS1(3)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —
Cardiac conduction disease MYH-6 related congenital heart defects
1 gene
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1 of 1 corroborated by 2+ sources
MYH6(2)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —
Myoclonus-renal failure syndrome progressive myoclonus epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
SCARB2(2)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. Cluster 329 →
Cataract-microcornea syndrome nance-horan syndrome
1 gene
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1 of 1 corroborated by 2+ sources
NHS(2)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. Cluster 43 →
Epilepsy of infancy with migrating focal seizures neonatal encephalopathy with non-epileptic myoclonus
1 gene
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1 of 1 corroborated by 2+ sources
KCNQ2(2)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.