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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Congenital chromosomal disease Thyroid carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
POT1(2)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —
Revesz debuse syndrome Thyroid carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
TINF2(2)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. Cluster 130 →
Revesz syndrome Thyroid carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
TINF2(6)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. Cluster 130 →
Charge syndrome TNF receptor 1-associated periodic fever syndrome
1 gene
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1 of 1 corroborated by 2+ sources
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —
Exudative vitreoretinopathy TSPAN12-related exudative vitreoretinopathy
1 gene
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1 of 1 corroborated by 2+ sources
TSPAN12(6)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —
Dystonia musculorum deformans TUBB4A-related neurologic disorder
1 gene
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1 of 1 corroborated by 2+ sources
TUBB4A(2)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —
Genetic torsion dystonia TUBB4A-related neurologic disorder
1 gene
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1 of 1 corroborated by 2+ sources
TUBB4A(2)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —
Bilateral multicystic dysplastic kidney Tubulointerstitial kidney disease
1 gene
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1 of 1 corroborated by 2+ sources
HNF1B(2)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. Cluster 23 →
Congenital hypoplasia of aortic arch Urogenital abnormalities
1 gene
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PKHD1(1)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —
Periportal fibrosis Urogenital abnormalities
1 gene
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PKHD1(1)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —
Congenital hernia of foramen of bochdalek Venous insufficiency
1 gene
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1 of 1 corroborated by 2+ sources
EFEMP1(2)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —
Kabuki syndrome Ventriculomegaly with arthrogryposis
1 gene
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1 of 1 corroborated by 2+ sources
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —
Charge syndrome Verheij syndrome
1 gene
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1 of 1 corroborated by 2+ sources
PUF60(3)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. Cluster 224 →
Vitamin b12-unresponsive methylmalonic acidemia Vitamin deficiency disorder
1 gene
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1 of 1 corroborated by 2+ sources
FUT2(3)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. Cluster 106 →
Haddad syndrome Waardenburg syndrome type 4B
1 gene
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1 of 1 corroborated by 2+ sources
EDN3(2)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —
Congenital central hypoventilation syndrome Waardenburg syndrome type 4B
1 gene
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1 of 1 corroborated by 2+ sources
EDN3(4)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —
Dystonia musculorum deformans Whispering dysphonia
1 gene
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1 of 1 corroborated by 2+ sources
TUBB4A(2)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —
Genetic torsion dystonia Whispering dysphonia
1 gene
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1 of 1 corroborated by 2+ sources
TUBB4A(2)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —
Combined pituitary hormone deficiency Winkelman bethge pfeiffer syndrome
1 gene
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1 of 1 corroborated by 2+ sources
LHX3(2)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. Cluster 218 →
Pituitary hormone deficiency Winkelman bethge pfeiffer syndrome
1 gene
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1 of 1 corroborated by 2+ sources
LHX3(3)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. Cluster 218 →
Diabetic polyneuropathy Wolfram-like syndrome
1 gene
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1 of 1 corroborated by 2+ sources
WFS1(8)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —
Benign pemphigus Wrinkly skin syndrome
1 gene
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1 of 1 corroborated by 2+ sources
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —
Darier disease Wrinkly skin syndrome
1 gene
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1 of 1 corroborated by 2+ sources
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —
Dystonia musculorum deformans X-linked dystonia-parkinsonism
1 gene
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1 of 1 corroborated by 2+ sources
TAF1(4)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. Cluster 167 →
Genetic torsion dystonia X-linked dystonia-parkinsonism
1 gene
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1 of 1 corroborated by 2+ sources
TAF1(4)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. Cluster 167 →

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.