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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Disseminated intravascular coagulation Spontaneous coronary artery dissection
1 gene
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1 of 1 corroborated by 2+ sources
F3(2)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. Cluster 55 →
Spontaneous coronary artery dissection Von willebrand disorder
1 gene
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1 of 1 corroborated by 2+ sources
F3(2)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —
Collagenopathy Synovitis
1 gene
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1 of 1 corroborated by 2+ sources
COL2A1(3)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. Cluster 11 →
Coxa plana Synovitis
1 gene
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1 of 1 corroborated by 2+ sources
COL2A1(2)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. Cluster 11 →
Czech dysplasia Synovitis
1 gene
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1 of 1 corroborated by 2+ sources
COL2A1(3)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. Cluster 11 →
Dysspondyloenchondromatosis Synovitis
1 gene
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1 of 1 corroborated by 2+ sources
COL2A1(4)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. Cluster 11 →
Polycythemia vera Tatton-Brown-Rahman overgrowth syndrome
1 gene
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1 of 1 corroborated by 2+ sources
DNMT3A(2)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —
combined immunodeficiency due to RELA haploinsufficiency Hepatic insufficiency
1 gene
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1 of 1 corroborated by 2+ sources
RELA(2)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —
Combined pituitary hormone deficiency Culler-jones syndrome
1 gene
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1 of 1 corroborated by 2+ sources
GLI2(5)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —
Combined pituitary hormone deficiency Postaxial polydactyly–anterior pituitary anomalies–facial dysmorphism syndrome
1 gene
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1 of 1 corroborated by 2+ sources
GLI2(5)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —
complex movement disorder with or without neurodevelopmental features Dystonia musculorum deformans
1 gene
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1 of 1 corroborated by 2+ sources
HPCA(3)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. Cluster 167 →
complex movement disorder with or without neurodevelopmental features Genetic torsion dystonia
1 gene
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1 of 1 corroborated by 2+ sources
HPCA(2)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. Cluster 167 →
Congenital central hypoventilation syndrome Congenital digestive system anomaly
1 gene
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1 of 1 corroborated by 2+ sources
RET(2)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —
Congenital central hypoventilation syndrome Medullary thyroid cancer
1 gene
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1 of 1 corroborated by 2+ sources
RET(2)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —
Congenital central hypoventilation syndrome multiple endocrine neoplasia type 2B
1 gene
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1 of 1 corroborated by 2+ sources
RET(3)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —
Congenital esophageal anomaly Repolarization syndrome
1 gene
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CACNB2(1)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. Cluster 404 →
Congenital esophageal anomaly X-linked opitz syndrome
1 gene
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1 of 1 corroborated by 2+ sources
MID1(4)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. Cluster 404 →
Congenital esophageal anomaly Congenital insufficiency of mitral valve
1 gene
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LMCD1(1)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. Cluster 404 →
Congenital factor ii deficiency Disseminated intravascular coagulation
1 gene
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1 of 1 corroborated by 2+ sources
F2(3)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —
Congenital factor vii deficiency Disseminated intravascular coagulation
1 gene
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1 of 1 corroborated by 2+ sources
F7(5)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —
Congenital factor xi deficiency Thromboembolic pulmonary hypertension
1 gene
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1 of 1 corroborated by 2+ sources
F11(3)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —
Bone marrow failure syndromes Congenital glucokinase-related hyperinsulinism
1 gene
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1 of 1 corroborated by 2+ sources
GCK(2)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —
Combined pituitary hormone deficiency Congenital hypopituitarism
1 gene
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1 of 1 corroborated by 2+ sources
FOXA2(3)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. Cluster 218 →
Congenital lipoid adrenal hyperplasia Glucocorticoid deficiency
1 gene
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1 of 1 corroborated by 2+ sources
STAR(4)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —
Adrenocortical carcinoma Bone marrow failure syndromes
1 gene
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1 of 1 corroborated by 2+ sources
TP53(4)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. Cluster 3 →

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.