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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Diabetes mellitus type 2 spondyloepimetaphyseal dysplasia with joint laxity, type 3
1 gene
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1 of 1 corroborated by 2+ sources
EXOC6B(2)
0.000 1.000 2.00e-1 2.00e-1 —
Autism Intellectual developmental disorder speech peripheral neuropathy
1 gene
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1 of 1 corroborated by 2+ sources
NEMF(5)
0.001 0.500 1.81e-1 1.82e-1 —
Autism Carnitine acetyltransferase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
0.001 0.500 1.81e-1 1.82e-1 —
Intellectual disability with strabismus syndrome Neurodevelopmental disorder
1 gene
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1 of 1 corroborated by 2+ sources
ADAT3(3)
0.001 0.333 1.72e-1 1.72e-1 —
immunodeficiency 23 Schizophrenia
1 gene
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1 of 1 corroborated by 2+ sources
PGM3(2)
0.000 1.000 1.65e-1 1.66e-1 —
hypotaurinemic retinal degeneration and cardiomyopathy Schizophrenia
1 gene
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1 of 1 corroborated by 2+ sources
SLC6A6(2)
0.000 1.000 1.65e-1 1.66e-1 —
inflammatory bowel disease 28 Schizophrenia
1 gene
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1 of 1 corroborated by 2+ sources
IL10RA(2)
0.000 1.000 1.65e-1 1.66e-1 —
intellectual disability, autosomal recessive 61 Schizophrenia
1 gene
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1 of 1 corroborated by 2+ sources
RUSC2(2)
0.000 1.000 1.65e-1 1.66e-1 —
Galactose mutarotase deficiency Schizophrenia
1 gene
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GALM(1)
0.000 1.000 1.65e-1 1.66e-1 —
glyceronephosphate O-acyltransferase deficiency Schizophrenia
1 gene
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1 of 1 corroborated by 2+ sources
GNPAT(2)
0.000 1.000 1.65e-1 1.66e-1 —
foveal hypoplasia - optic nerve decussation defect - anterior segment dysgenesis syndrome Schizophrenia
1 gene
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1 of 1 corroborated by 2+ sources
SLC38A8(2)
0.000 1.000 1.65e-1 1.66e-1 —
glycogen storage disorder due to hepatic glycogen synthase deficiency Schizophrenia
1 gene
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1 of 1 corroborated by 2+ sources
GYS2(2)
0.000 1.000 1.65e-1 1.66e-1 —
Glyoxalase ii deficiency Schizophrenia
1 gene
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HAGH(1)
0.000 1.000 1.65e-1 1.66e-1 Cluster 2 →
progressive essential tremor-speech impairment-facial dysmorphism-intellectual disability-abnormal behavior syndrome Schizophrenia
1 gene
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1 of 1 corroborated by 2+ sources
SLC6A17(2)
0.000 1.000 1.65e-1 1.66e-1 —
Pyridoxamine 5'-phosphate oxidase deficiency Schizophrenia
1 gene
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1 of 1 corroborated by 2+ sources
PNPO(2)
0.000 1.000 1.65e-1 1.66e-1 —
Phosphoribosylaminoimidazole carboxylase deficiency Schizophrenia
1 gene
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PAICS(1)
0.000 1.000 1.65e-1 1.66e-1 Cluster 2 →
primary ciliary dyskinesia 18 Schizophrenia
1 gene
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1 of 1 corroborated by 2+ sources
DNAAF5(2)
0.000 1.000 1.65e-1 1.66e-1 —
Pash syndrome Schizophrenia
1 gene
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1 of 1 corroborated by 2+ sources
NCSTN(2)
0.000 1.000 1.65e-1 1.66e-1 —
pyridoxal phosphate-responsive seizures Schizophrenia
1 gene
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1 of 1 corroborated by 2+ sources
PNPO(2)
0.000 1.000 1.65e-1 1.66e-1 —
Pulmonary agenesis Schizophrenia
1 gene
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1 of 1 corroborated by 2+ sources
EFNB2(2)
0.000 1.000 1.65e-1 1.66e-1 —
orofaciodigital syndrome type 14 Schizophrenia
1 gene
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1 of 1 corroborated by 2+ sources
C2CD3(2)
0.000 1.000 1.65e-1 1.66e-1 —
Nasopalpebral lipoma-coloboma syndrome Schizophrenia
1 gene
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1 of 1 corroborated by 2+ sources
ZDBF2(2)
0.000 1.000 1.65e-1 1.66e-1 —
optic atrophy 15 Schizophrenia
1 gene
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1 of 1 corroborated by 2+ sources
MCAT(2)
0.000 1.000 1.65e-1 1.66e-1 —
Oculocerebrodental syndrome Schizophrenia
1 gene
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1 of 1 corroborated by 2+ sources
PIK3C2A(3)
0.000 1.000 1.65e-1 1.66e-1 Cluster 2 →
Nonobstructive azoospermia Schizophrenia
1 gene
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1 of 1 corroborated by 2+ sources
SLC26A8(2)
0.000 1.000 1.65e-1 1.66e-1 —

Showing 25 of 20918 pairs, sorted by significance (descending). Click a column header to sort.