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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Copper overload cirrhosis papillary renal cell carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
MET(3)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. —
Partial androgen insensitivity syndrome Prostatic intraepithelial neoplasia
1 gene
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1 of 1 corroborated by 2+ sources
AR(4)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. Cluster 193 →
Partial deficiency of methylmalonyl-coenzyme a mutase Vitamin b12 deficiency
1 gene
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1 of 1 corroborated by 2+ sources
MMUT(2)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. —
Melanocytic nevus PLA2G6-associated neurodegeneration
1 gene
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1 of 1 corroborated by 2+ sources
PLA2G6(2)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. —
Macrothrombocytopenia platelet-type bleeding disorder 15
1 gene
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1 of 1 corroborated by 2+ sources
ACTN1(3)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. Cluster 33 →
Macrothrombocytopenia platelet-type bleeding disorder 17
1 gene
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1 of 1 corroborated by 2+ sources
GFI1B(4)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. —
Macrothrombocytopenia platelet-type von Willebrand disease
1 gene
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1 of 1 corroborated by 2+ sources
GP1BA(3)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. —
Hyperinsulinemic hypoglycemia PMM2-congenital disorder of glycosylation
1 gene
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1 of 1 corroborated by 2+ sources
PMM2(2)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. —
Cutaneous lupus erythematosus poirier-bienvenu neurodevelopmental syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CSNK2B(2)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. —
Ciliary dyskinesia, with or without situs inversus primary ciliary dyskinesia 1
1 gene
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1 of 1 corroborated by 2+ sources
DNAI1(2)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. Cluster 9 →
Ciliary dyskinesia, with or without situs inversus primary ciliary dyskinesia 11
1 gene
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1 of 1 corroborated by 2+ sources
RSPH4A(2)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. Cluster 9 →
Ciliary dyskinesia, with or without situs inversus primary ciliary dyskinesia 15
1 gene
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1 of 1 corroborated by 2+ sources
CCDC40(2)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. Cluster 9 →
Ciliary dyskinesia, with or without situs inversus primary ciliary dyskinesia 17
1 gene
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1 of 1 corroborated by 2+ sources
DNAAF19(2)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. Cluster 9 →
Ciliary dyskinesia, with or without situs inversus primary ciliary dyskinesia 2
1 gene
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1 of 1 corroborated by 2+ sources
DNAAF3(2)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. Cluster 9 →
Ciliary dyskinesia, with or without situs inversus primary ciliary dyskinesia 21
1 gene
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1 of 1 corroborated by 2+ sources
DRC1(2)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. Cluster 9 →
Ciliary dyskinesia, with or without situs inversus primary ciliary dyskinesia 25
1 gene
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1 of 1 corroborated by 2+ sources
DNAAF4(2)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. Cluster 9 →
Ciliary dyskinesia, with or without situs inversus primary ciliary dyskinesia 30
1 gene
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1 of 1 corroborated by 2+ sources
ODAD3(2)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. Cluster 9 →
Ciliary dyskinesia, with or without situs inversus primary ciliary dyskinesia 7
1 gene
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1 of 1 corroborated by 2+ sources
DNAH11(2)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. Cluster 9 →
Prostatic intraepithelial neoplasia PTEN hamartoma tumor syndrome
1 gene
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1 of 1 corroborated by 2+ sources
PTEN(2)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. —
congenital myasthenic syndrome 6 Presynaptic congenital myasthenic syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CHAT(4)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. Cluster 34 →
congenital myasthenic syndrome 7 Presynaptic congenital myasthenic syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SYT2(4)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. Cluster 34 →
congenital myasthenic syndrome 8 Presynaptic congenital myasthenic syndrome
1 gene
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1 of 1 corroborated by 2+ sources
AGRN(4)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. Cluster 34 →
Autoimmune pulmonary alveolar proteinosis Congenital pulmonary artery atresia
1 gene
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1 of 1 corroborated by 2+ sources
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. Cluster 1 →
Congenital pulmonary artery atresia Heerfordt syndrome
1 gene
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0.083 1.000 7.14e-4 1.34e-3 ✓ sig. Cluster 1 →
Congenitally uncorrected transposition of the great arteries Transposition of the great arteries
1 gene
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1 of 1 corroborated by 2+ sources
CFC1(2)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. Cluster 113 →

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.