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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Osteochondroma Specific learning disability
1 gene
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1 of 1 corroborated by 2+ sources
PTPN11(2)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —
Latent autoimmune diabetes in adults spinocerebellar ataxia type 2
1 gene
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1 of 1 corroborated by 2+ sources
ATXN2(2)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —
Eye neoplasms Temperature-sensitive oculocutaneous albinism
1 gene
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1 of 1 corroborated by 2+ sources
TYR(3)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —
Bile duct neoplasms Papilloma
1 gene
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EGFR(1)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —
Bilirubin metabolism disease Dihydropyrimidinase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
DPYS(5)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —
Blepharophimosis-ptosis-epicanthus inversus syndrome Duane retraction syndrome
1 gene
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1 of 1 corroborated by 2+ sources
FOXL2(6)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —
Bone remodeling disease primary ciliary dyskinesia 7
1 gene
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1 of 1 corroborated by 2+ sources
DNAH11(2)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. Cluster 9 →
Brachydactyly with hypertension Eye neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
PDE3A(3)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —
Atrioventricular septal defect Brain abnormalities developmental delay facial dysmorphism intellectual disability syndrome
1 gene
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1 of 1 corroborated by 2+ sources
MEF2C(2)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. Cluster 60 →
BRCA1-related cancer predisposition Periventricular nodular heterotopia
1 gene
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1 of 1 corroborated by 2+ sources
BRCA1(2)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —
Brooke-spiegler syndrome Frontotemporal dementia with or without amyotrophic lateral sclerosis
1 gene
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1 of 1 corroborated by 2+ sources
CYLD(6)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —
Butyrylcholinesterase deficiency Tonic-clonic epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
BCHE(5)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —
Butyrylcholinesterase deficiency Paralysis
1 gene
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1 of 1 corroborated by 2+ sources
BCHE(5)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. Cluster 378 →
CACNA1F-related retinopathy Congenital stationary night blindness
1 gene
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1 of 1 corroborated by 2+ sources
CACNA1F(3)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —
Cardiac-urogenital syndrome Nanophthalmos
1 gene
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1 of 1 corroborated by 2+ sources
MYRF(7)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —
cardiomyopathy, dilated, 2l Myofibrillar myopathy
1 gene
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1 of 1 corroborated by 2+ sources
LDB3(4)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —
cataract 50 with or without glaucoma Stomach disease
1 gene
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1 of 1 corroborated by 2+ sources
TRPM3(2)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. Cluster 109 →
Cataract-alopecia-sclerodactyly syndrome Hypotrichosis simplex
1 gene
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1 of 1 corroborated by 2+ sources
LSS(3)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —
Paralysis Ventricular outflow obstruction
1 gene
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1 of 1 corroborated by 2+ sources
INS(2)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —
Paranoia pitt-hopkins syndrome
1 gene
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1 of 1 corroborated by 2+ sources
TCF4(2)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. Cluster 222 →
Dopamine transporter deficiency syndrome Paranoia
1 gene
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1 of 1 corroborated by 2+ sources
SLC6A3(4)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —
Paranoia SLC6A3-related dopamine transporter deficiency syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SLC6A3(3)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —
Paranoia Tyrosine kinase 2 deficiency
1 gene
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1 of 1 corroborated by 2+ sources
TYK2(2)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —
Paranoia spermatogenic failure 46
1 gene
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1 of 1 corroborated by 2+ sources
DNAH8(3)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —
Partial deficiency of methylmalonyl-coenzyme a mutase Vitamin b deficiency
1 gene
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1 of 1 corroborated by 2+ sources
MMUT(2)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.