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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Bronchial hyperreactivity platelet-type bleeding disorder 12
1 gene
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1 of 1 corroborated by 2+ sources
PTGS1(3)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Endocrine system disease Prader-willi-like syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CPE(3)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. Cluster 153 →
Cholangitis progressive familial intrahepatic cholestasis type 3
1 gene
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1 of 1 corroborated by 2+ sources
ABCB4(3)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Anophthalmia progressive retinal dystrophy due to retinol transport defect
1 gene
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1 of 1 corroborated by 2+ sources
RBP4(2)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Anterior segment mesenchymal dysgenesis progressive retinal dystrophy due to retinol transport defect
1 gene
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1 of 1 corroborated by 2+ sources
RBP4(2)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Arrhythmogenic right ventricular dysplasia Naxos disease
1 gene
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1 of 1 corroborated by 2+ sources
JUP(6)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Angle closure glaucoma Neonatal diabetes-congenital hypothyroidism-congenital glaucoma-hepatic fibrosis-polycystic kidney syndrome
1 gene
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1 of 1 corroborated by 2+ sources
GLIS3(2)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Neurodegeneration with brain iron accumulation neurodegeneration with brain iron accumulation 4
1 gene
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1 of 1 corroborated by 2+ sources
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. Cluster 92 →
Hemochromatosis neurodegeneration with brain iron accumulation 9
1 gene
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1 of 1 corroborated by 2+ sources
FTH1(5)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Neurodegeneration with brain iron accumulation neuroferritinopathy
1 gene
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1 of 1 corroborated by 2+ sources
FTL(3)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Bicuspid aortic valve NOTCH1-related AOS spectrum disorder
1 gene
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1 of 1 corroborated by 2+ sources
NOTCH1(4)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
NYX-related retinopathy Oguchi disease
1 gene
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1 of 1 corroborated by 2+ sources
NYX(2)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. Cluster 151 →
Anophthalmia Ocular dysgenesis
1 gene
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1 of 1 corroborated by 2+ sources
ELP4(3)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Aland island eye disease Oguchi disease
1 gene
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CACNA1F(1)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Anophthalmia Orbital disease
1 gene
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1 of 1 corroborated by 2+ sources
RARB(2)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Avascular necrosis of bone Osteolysis, hereditary multicentric
1 gene
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1 of 1 corroborated by 2+ sources
MMP2(2)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Metabolic bone disorder Osteolysis, hereditary multicentric
1 gene
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1 of 1 corroborated by 2+ sources
MMP2(2)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Osteolysis, hereditary multicentric Osteonecrosis of medial femoral condyle
1 gene
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1 of 1 corroborated by 2+ sources
MMP2(2)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Caveolinopathy Distal myopathy
1 gene
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1 of 1 corroborated by 2+ sources
CAV3(4)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Cerebellar ataxia, areflexia, pes cavus, optic atrophy, and sensorineural hearing loss Congenital epicanthus
1 gene
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1 of 1 corroborated by 2+ sources
ATP1A3(5)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. Cluster 238 →
Blindness Cerebelloparenchymal disorder
1 gene
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1 of 1 corroborated by 2+ sources
PMPCA(2)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Cerebrotendinous xanthomatosis Metabolic bone disorder
1 gene
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1 of 1 corroborated by 2+ sources
CYP27A1(5)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Childhood-onset sensorineural hearing impairment Perrault syndrome
1 gene
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1 of 1 corroborated by 2+ sources
PRORP(2)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. Cluster 336 →
Caffey disease Cholangitis
1 gene
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1 of 1 corroborated by 2+ sources
COL1A1(6)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. Cluster 138 →
Cholangitis Maternal hypertension
1 gene
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1 of 1 corroborated by 2+ sources
COL1A1(2)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. Cluster 138 →

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.