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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
hand-foot-genital syndrome Hepatocellular carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
HOXA13(2)
0.002 1.000 4.21e-2 4.40e-2 ✓ sig. —
Hepatic glycogen synthase deficiency Hepatocellular carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
GYS2(2)
0.002 1.000 4.21e-2 4.40e-2 ✓ sig. —
Hepatocellular carcinoma hereditary sclerosing poikiloderma with tendon and pulmonary involvement
1 gene
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1 of 1 corroborated by 2+ sources
FAM111B(2)
0.002 1.000 4.21e-2 4.40e-2 ✓ sig. —
combined immunodeficiency due to GINS1 deficiency Hepatocellular carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
GINS1(2)
0.002 1.000 4.21e-2 4.40e-2 ✓ sig. —
Congenital alpha-fetoprotein deficiency Hepatocellular carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
AFP(3)
0.002 1.000 4.21e-2 4.40e-2 ✓ sig. —
Lung cancer PCARE-related retinopathy
1 gene
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1 of 1 corroborated by 2+ sources
PCARE(2)
0.002 1.000 4.21e-2 4.40e-2 ✓ sig. —
Hepatocellular carcinoma phosphoenolpyruvate carboxykinase deficiency, cytosolic
1 gene
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1 of 1 corroborated by 2+ sources
PCK1(2)
0.002 1.000 4.21e-2 4.40e-2 ✓ sig. —
21q22.11q22.12 microdeletion syndrome Hepatocellular carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
KIF15(3)
0.002 1.000 4.21e-2 4.40e-2 ✓ sig. —
Acetyl-coa carboxylase deficiency Hepatocellular carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
ACACA(2)
0.002 1.000 4.21e-2 4.40e-2 ✓ sig. —
Aminoaciduria Hepatocellular carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
CLTRN(2)
0.002 1.000 4.21e-2 4.40e-2 ✓ sig. —
Diaphanospondylodysostosis Hepatocellular carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
BMPER(6)
0.002 1.000 4.21e-2 4.40e-2 ✓ sig. —
Beck-fahrner syndrome Lung cancer
1 gene
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1 of 1 corroborated by 2+ sources
TET3(6)
0.002 1.000 4.21e-2 4.40e-2 ✓ sig. —
Lung cancer Majeed syndrome
1 gene
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1 of 1 corroborated by 2+ sources
LPIN2(7)
0.002 1.000 4.21e-2 4.40e-2 ✓ sig. —
Hepatocellular carcinoma meier-gorlin syndrome 4
1 gene
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1 of 1 corroborated by 2+ sources
CDT1(2)
0.002 1.000 4.21e-2 4.40e-2 ✓ sig. —
Hepatocellular carcinoma meier-gorlin syndrome 5
1 gene
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1 of 1 corroborated by 2+ sources
CDC6(2)
0.002 1.000 4.21e-2 4.40e-2 ✓ sig. —
Hepatocellular carcinoma meier-gorlin syndrome 6
1 gene
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1 of 1 corroborated by 2+ sources
GMNN(2)
0.002 1.000 4.21e-2 4.40e-2 ✓ sig. —
Hepatocellular carcinoma mitchell syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ACOX1(2)
0.002 1.000 4.21e-2 4.40e-2 ✓ sig. —
Hepatocellular carcinoma Mitochondrial encephalocardiomyopathy
1 gene
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1 of 1 corroborated by 2+ sources
TMEM70(2)
0.002 1.000 4.21e-2 4.40e-2 ✓ sig. —
Braddock-carey syndrome Hepatocellular carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
KIF15(4)
0.002 1.000 4.21e-2 4.40e-2 ✓ sig. —
C3hex olfactory ability Lung cancer
1 gene
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1 of 1 corroborated by 2+ sources
OR2J3(2)
0.002 1.000 4.21e-2 4.40e-2 ✓ sig. Cluster 20 →
Carnosinemia Hepatocellular carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
CNDP1(2)
0.002 1.000 4.21e-2 4.40e-2 ✓ sig. —
Corpus callosum agenesis with intellectual disability, coloboma, micrognathia Hepatocellular carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
IGBP1(5)
0.002 1.000 4.21e-2 4.40e-2 ✓ sig. —
Corpus callosum agenesis with intellectual disability, ocular coloboma, micrognathia Hepatocellular carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
IGBP1(3)
0.002 1.000 4.21e-2 4.40e-2 ✓ sig. —
Citrin deficiency Lung cancer
1 gene
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1 of 1 corroborated by 2+ sources
0.002 1.000 4.21e-2 4.40e-2 ✓ sig. —
Hepatocellular carcinoma Thoracic malformation
1 gene
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1 of 1 corroborated by 2+ sources
FGF4(3)
0.002 1.000 4.21e-2 4.40e-2 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.