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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Aica-ribosiduria Blindness
1 gene
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1 of 1 corroborated by 2+ sources
ATIC(3)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Aica-ribosiduria Spondylometaphyseal dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
ATIC(2)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. Cluster 21 →
AIPL1-related retinopathy Blindness
1 gene
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1 of 1 corroborated by 2+ sources
AIPL1(2)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. Cluster 241 →
Alstrom syndrome Stickler syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ALMS1(3)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
amyotrophic lateral sclerosis 26 with or without frontotemporal dementia Distal myopathy
1 gene
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1 of 1 corroborated by 2+ sources
TIA1(3)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Angel-shaped phalangoepiphyseal dysplasia Developmental dysplasia of the hip
1 gene
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1 of 1 corroborated by 2+ sources
GDF5(4)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Anterior cruciate ligament injury Hyperemia
1 gene
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1 of 1 corroborated by 2+ sources
CNR2(2)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
anterior segment dysgenesis 7 Anterior segment mesenchymal dysgenesis
1 gene
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1 of 1 corroborated by 2+ sources
PXDN(3)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
anterior segment dysgenesis 8 Anterior segment mesenchymal dysgenesis
1 gene
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1 of 1 corroborated by 2+ sources
CPAMD8(3)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
aortic valve disease 3 Bicuspid aortic valve
1 gene
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1 of 1 corroborated by 2+ sources
ROBO4(3)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. Cluster 188 →
combined immunodeficiency due to RELA haploinsufficiency Endocrine system disease
1 gene
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1 of 1 corroborated by 2+ sources
RELA(3)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Combined immunodeficiency with autoimmunity and spondylometaphyseal dysplasia Spondylometaphyseal dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
ACP5(2)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. Cluster 21 →
Anterior segment mesenchymal dysgenesis Congenital aphakia
1 gene
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FOXE3(1)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Congenital brain dysgenesis due to glutamine synthetase deficiency Hepatic encephalopathy
1 gene
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1 of 1 corroborated by 2+ sources
GLUL(6)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. Cluster 57 →
Anterior segment mesenchymal dysgenesis Congenital cataract anterior segment dysgenesis syndrome
1 gene
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1 of 1 corroborated by 2+ sources
PITX3(3)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Bicuspid aortic valve Congenital erythroderma with palmoplantar keratoderma, hypotrichosis, and hyper-ige
1 gene
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1 of 1 corroborated by 2+ sources
DSG1(3)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Congenital folate absorption defect Pancytopenia
1 gene
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1 of 1 corroborated by 2+ sources
SLC46A1(3)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. Cluster 411 →
Bicuspid aortic valve congenital heart defects, multiple types, 2
1 gene
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1 of 1 corroborated by 2+ sources
TAB2(2)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. Cluster 188 →
Congenital hydrocephalus SMARCC1-associated developmental dysgenesis syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SMARCC1(3)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. Cluster 293 →
Congenital hydrocephalus scott syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ANO6(2)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. Cluster 293 →
Congenital hydrocephalus Delta-sarcoglycan-related limb-girdle muscular dystrophy r6
1 gene
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1 of 1 corroborated by 2+ sources
SGCD(2)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Congenital hypoplasia of pancreas Permanent neonatal diabetes mellitus
1 gene
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1 of 1 corroborated by 2+ sources
PDX1(4)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Congenital ichthyosis-intellectual disability-spastic quadriplegia syndrome Rosacea
1 gene
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1 of 1 corroborated by 2+ sources
ELOVL4(4)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Congenital malabsorptive diarrhea Permanent neonatal diabetes mellitus
1 gene
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1 of 1 corroborated by 2+ sources
NEUROG3(3)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Congenital malabsorptive diarrhea with diabetes mellitus and combined pituitary hormone deficiency Permanent neonatal diabetes mellitus
1 gene
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1 of 1 corroborated by 2+ sources
NEUROG3(3)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.