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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Bicuspid aortic valve SMAD6-related disease
1 gene
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1 of 1 corroborated by 2+ sources
SMAD6(4)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Anterior segment mesenchymal dysgenesis spinocerebellar ataxia type 29
1 gene
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1 of 1 corroborated by 2+ sources
ITPR1(2)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Spondylometaphyseal dysplasia spondylometaphyseal dysplasia-cone-rod dystrophy syndrome
1 gene
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1 of 1 corroborated by 2+ sources
PCYT1A(7)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Spondylometaphyseal dysplasia spondylometaphyseal dysplasia, 'corner fracture' type
1 gene
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1 of 1 corroborated by 2+ sources
FN1(6)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Stickler syndrome Stickler syndrome, type 4
1 gene
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1 of 1 corroborated by 2+ sources
COL9A1(8)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. Cluster 248 →
Endocrine system disease syndromic multisystem autoimmune disease due to ITCH deficiency
1 gene
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1 of 1 corroborated by 2+ sources
ITCH(2)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. Cluster 153 →
Developmental delay with immunodeficiency syndrome Endocrine system disease
1 gene
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1 of 1 corroborated by 2+ sources
NFE2L2(3)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Developmental dysplasia of the hip Tricuspid atresia
1 gene
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1 of 1 corroborated by 2+ sources
LRP1(4)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. Cluster 194 →
Developmental dysplasia of the hip Hip dislocation-facial dysmorphism syndrome
1 gene
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1 of 1 corroborated by 2+ sources
TRIM33(4)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Arrhythmogenic right ventricular dysplasia dilated cardiomyopathy 1BB
1 gene
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1 of 1 corroborated by 2+ sources
DSG2(2)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. Cluster 4 →
Arrhythmogenic right ventricular dysplasia dilated cardiomyopathy 1C
1 gene
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1 of 1 corroborated by 2+ sources
LDB3(2)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Arrhythmogenic right ventricular dysplasia dilated cardiomyopathy 1HH
1 gene
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1 of 1 corroborated by 2+ sources
BAG3(2)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. Cluster 4 →
Congenital hydrocephalus dilated cardiomyopathy 1L
1 gene
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1 of 1 corroborated by 2+ sources
SGCD(2)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
autosomal recessive limb-girdle muscular dystrophy dilated cardiomyopathy 1L
1 gene
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SGCD(1)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
autosomal recessive limb-girdle muscular dystrophy Distal anoctaminopathy
1 gene
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1 of 1 corroborated by 2+ sources
ANO5(2)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Distal myopathy distal myopathy with vocal cord weakness
1 gene
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1 of 1 corroborated by 2+ sources
MATR3(2)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Dorfman-chanarin disease Lamellar ichthyosis
1 gene
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1 of 1 corroborated by 2+ sources
ABHD5(2)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Dyschromatosis Esophageal ulcer
1 gene
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1 of 1 corroborated by 2+ sources
SASH1(2)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Distal myopathy Dysferlinopathy
1 gene
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1 of 1 corroborated by 2+ sources
DYSF(3)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
autosomal recessive limb-girdle muscular dystrophy Dysferlinopathy
1 gene
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1 of 1 corroborated by 2+ sources
DYSF(3)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Early-onset combined immunodeficiency with low ig due to dominant-negative ikaros mutation Pancytopenia
1 gene
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1 of 1 corroborated by 2+ sources
IKZF1(5)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Early-onset combined immunodeficiency with low ig due to dominant-negative ikaros mutation Rosacea
1 gene
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1 of 1 corroborated by 2+ sources
IKZF1(2)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
ehlers-danlos syndrome, vascular type Nephrosclerosis
1 gene
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1 of 1 corroborated by 2+ sources
COL3A1(3)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. Cluster 334 →
Endocrine system disease immunodeficiency, developmental delay, and hypohomocysteinemia
1 gene
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1 of 1 corroborated by 2+ sources
NFE2L2(3)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Endocrine system disease Mucocutaneous ulceration
1 gene
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1 of 1 corroborated by 2+ sources
RELA(4)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.