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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Muscle eye brain disease myopathy caused by variation in FKRP
1 gene
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1 of 1 corroborated by 2+ sources
FKRP(4)
0.063 1.000 9.74e-4 1.67e-3 ✓ sig. Cluster 14 →
Muscle eye brain disease myopathy caused by variation in FKTN
1 gene
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1 of 1 corroborated by 2+ sources
FKTN(4)
0.063 1.000 9.74e-4 1.67e-3 ✓ sig. Cluster 14 →
Muscle eye brain disease myopathy caused by variation in GMPPB
1 gene
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1 of 1 corroborated by 2+ sources
GMPPB(4)
0.063 1.000 9.74e-4 1.67e-3 ✓ sig. Cluster 14 →
Muscle eye brain disease myopathy caused by variation in POMGNT1
1 gene
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1 of 1 corroborated by 2+ sources
POMGNT1(4)
0.063 1.000 9.74e-4 1.67e-3 ✓ sig. Cluster 14 →
Muscle eye brain disease myopathy caused by variation in POMGNT2
1 gene
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1 of 1 corroborated by 2+ sources
POMGNT2(2)
0.063 1.000 9.74e-4 1.67e-3 ✓ sig. Cluster 14 →
Muscle eye brain disease myopathy caused by variation in POMT1
1 gene
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1 of 1 corroborated by 2+ sources
POMT1(4)
0.063 1.000 9.74e-4 1.67e-3 ✓ sig. Cluster 14 →
Muscle eye brain disease myopathy caused by variation in POMT2
1 gene
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1 of 1 corroborated by 2+ sources
POMT2(4)
0.063 1.000 9.74e-4 1.67e-3 ✓ sig. Cluster 14 →
nephronophthisis 2 Urinary system disease
1 gene
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1 of 1 corroborated by 2+ sources
INVS(2)
0.063 1.000 9.74e-4 1.67e-3 ✓ sig. —
neurodevelopmental disorder with nonspecific brain abnormalities and with or without seizures Syntelencephaly
1 gene
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1 of 1 corroborated by 2+ sources
DLL1(3)
0.063 1.000 9.74e-4 1.67e-3 ✓ sig. Cluster 96 →
neurodevelopmental disorder with nonspecific brain abnormalities and with or without seizures Septopreoptic holoprosencephaly
1 gene
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1 of 1 corroborated by 2+ sources
DLL1(2)
0.063 1.000 9.74e-4 1.67e-3 ✓ sig. Cluster 96 →
Muscle eye brain disease neuromuscular disease caused by qualitative or quantitative defects of alpha-dystroglycan
1 gene
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1 of 1 corroborated by 2+ sources
DAG1(3)
0.063 1.000 9.74e-4 1.67e-3 ✓ sig. Cluster 14 →
Neurooculorenal syndrome Renal agenesis
1 gene
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1 of 1 corroborated by 2+ sources
ROBO1(4)
0.063 1.000 9.74e-4 1.67e-3 ✓ sig. —
Gastro-entero-pancreatic neuroendocrine tumor Neutropenia, nonimmune chronic idiopathic, adult
1 gene
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1 of 1 corroborated by 2+ sources
GFI1(3)
0.063 1.000 9.74e-4 1.67e-3 ✓ sig. —
Hereditary breast and ovarian cancer syndrome nijmegen breakage syndrome
1 gene
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1 of 1 corroborated by 2+ sources
NBN(2)
0.063 1.000 9.74e-4 1.67e-3 ✓ sig. Cluster 132 →
Dyskinesia, drug-induced obsolete early infantile epileptic encephalopathy
1 gene
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1 of 1 corroborated by 2+ sources
GAD1(3)
0.063 1.000 9.74e-4 1.67e-3 ✓ sig. —
Coloboma Ocular dysgenesis
1 gene
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1 of 1 corroborated by 2+ sources
ELP4(3)
0.063 1.000 9.74e-4 1.67e-3 ✓ sig. —
Craniofacial microsomia Otodental dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
FGF3(3)
0.063 1.000 9.74e-4 1.67e-3 ✓ sig. —
46,xy gonadal dysgenesis Ovarian teratoma
1 gene
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1 of 1 corroborated by 2+ sources
BMP15(2)
0.063 1.000 9.74e-4 1.67e-3 ✓ sig. Cluster 38 →
22q11 deletion syndrome Syntelencephaly
1 gene
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1 of 1 corroborated by 2+ sources
FGF8(3)
0.063 1.000 9.74e-4 1.67e-3 ✓ sig. Cluster 96 →
22q11 deletion syndrome Septopreoptic holoprosencephaly
1 gene
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1 of 1 corroborated by 2+ sources
FGF8(3)
0.063 1.000 9.74e-4 1.67e-3 ✓ sig. Cluster 96 →
Alkuraya-kucinskas syndrome Renal agenesis
1 gene
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1 of 1 corroborated by 2+ sources
BLTP1(3)
0.063 1.000 9.74e-4 1.67e-3 ✓ sig. —
Alpha-1 antitrypsin deficiency Gastro-entero-pancreatic neuroendocrine tumor
1 gene
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1 of 1 corroborated by 2+ sources
0.063 1.000 9.74e-4 1.67e-3 ✓ sig. Cluster 245 →
17,20-lyase deficiency Amenorrhea
1 gene
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1 of 1 corroborated by 2+ sources
CYP17A1(2)
0.063 1.000 9.74e-4 1.67e-3 ✓ sig. Cluster 346 →
Amenorrhea Steroid 17-alpha-monooxygenase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
CYP17A1(2)
0.063 1.000 9.74e-4 1.67e-3 ✓ sig. Cluster 346 →
Amenorrhea hypercholesterolemia, autosomal dominant, type B
1 gene
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1 of 1 corroborated by 2+ sources
APOB(2)
0.063 1.000 9.74e-4 1.67e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.