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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Frontotemporal dementia with motor neuron disease Welander distal myopathy
1 gene
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1 of 1 corroborated by 2+ sources
SQSTM1(2)
0.100 0.500 1.04e-3 1.74e-3 ✓ sig. —
Wilson-turner syndrome X-linked syndromic intellectual disability
1 gene
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1 of 1 corroborated by 2+ sources
LAS1L(4)
0.100 0.500 1.04e-3 1.74e-3 ✓ sig. —
Charcot-marie-tooth disease, x-linked X-linked progressive cerebellar ataxia
1 gene
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1 of 1 corroborated by 2+ sources
GJB1(8)
0.100 0.500 1.04e-3 1.74e-3 ✓ sig. —
Penile hypospadia Yunis-varon syndrome
1 gene
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1 of 1 corroborated by 2+ sources
FIG4(5)
0.100 0.500 1.04e-3 1.74e-3 ✓ sig. Cluster 103 →
Benign neonatal-infantile seizures Episodic ataxia
1 gene
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1 of 1 corroborated by 2+ sources
SCN2A(5)
0.100 0.500 1.04e-3 1.74e-3 ✓ sig. —
Genetic recurrent myoglobinuria Rhabdomyolysis
1 gene
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1 of 1 corroborated by 2+ sources
OBSCN(3)
0.100 0.500 1.04e-3 1.74e-3 ✓ sig. —
Digestive system neoplasms Genetic recurrent myoglobinuria
1 gene
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1 of 1 corroborated by 2+ sources
LPIN1(2)
0.100 0.500 1.04e-3 1.74e-3 ✓ sig. —
Digestive system neoplasms Growth hormone insensitivity, partial
1 gene
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1 of 1 corroborated by 2+ sources
GHSR(3)
0.100 0.500 1.04e-3 1.74e-3 ✓ sig. —
Becker generalized myotonia Metachromatic leukodystrophy
1 gene
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CLCN1(1)
0.100 0.500 1.04e-3 1.74e-3 ✓ sig. —
hereditary nonpolyposis colon cancer Lig4 syndrome
1 gene
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1 of 1 corroborated by 2+ sources
XRCC4(2)
0.100 0.500 1.04e-3 1.74e-3 ✓ sig. —
Autoimmune pancreatitis Liver cancer
1 gene
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1 of 1 corroborated by 2+ sources
0.100 0.500 1.04e-3 1.74e-3 ✓ sig. —
Liver cancer Tongue cancer
1 gene
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0.100 0.500 1.04e-3 1.74e-3 ✓ sig. —
Frontotemporal dementia with motor neuron disease Masp2 deficiency
1 gene
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1 of 1 corroborated by 2+ sources
TARDBP(3)
0.100 0.500 1.04e-3 1.74e-3 ✓ sig. —
hereditary nonpolyposis colon cancer Interstitial nephritis
1 gene
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1 of 1 corroborated by 2+ sources
FAN1(4)
0.100 0.500 1.04e-3 1.74e-3 ✓ sig. —
Hereditary chronic pancreatitis Intestinal hypomagnesemia
1 gene
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1 of 1 corroborated by 2+ sources
TRPV6(2)
0.100 0.500 1.04e-3 1.74e-3 ✓ sig. —
Chediak-higashi syndrome Facial nerve disorder
1 gene
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SMCHD1(1)
0.100 0.500 1.04e-3 1.74e-3 ✓ sig. Cluster 313 →
B-cell chronic lymphocytic leukemia Childhood hypophosphatasia
1 gene
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1 of 1 corroborated by 2+ sources
P2RX7(2)
0.100 0.500 1.04e-3 1.74e-3 ✓ sig. —
Chorioretinal atrophy Prader-willi syndrome
1 gene
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-(1)
0.100 0.500 1.04e-3 1.74e-3 ✓ sig. —
Continuous spike and wave during slow wave sleep syndrome Pyridoxine dependent epilepsy
1 gene
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GRIN2A(1)
0.100 0.500 1.04e-3 1.74e-3 ✓ sig. Cluster 365 →
Charcot-marie-tooth disease, x-linked Cowchock syndrome
1 gene
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1 of 1 corroborated by 2+ sources
AIFM1(6)
0.100 0.500 1.04e-3 1.74e-3 ✓ sig. —
Accessory skin tag Demyelinating hereditary motor and sensory neuropathy
1 gene
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1 of 1 corroborated by 2+ sources
FBLN5(3)
0.100 0.500 1.04e-3 1.74e-3 ✓ sig. Cluster 80 →
Aicardi goutieres syndrome Deoxyguanosine kinase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
SAMHD1(3)
0.100 0.500 1.04e-3 1.74e-3 ✓ sig. Cluster 150 →
Congenital hand deformities Dermatosparaxis ehlers-danlos syndrome
1 gene
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1 of 1 corroborated by 2+ sources
0.100 0.500 1.04e-3 1.74e-3 ✓ sig. —
Hereditary chronic pancreatitis Pancreatic trypsinogen deficiency
1 gene
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1 of 1 corroborated by 2+ sources
PRSS1(3)
0.100 0.500 1.04e-3 1.74e-3 ✓ sig. —
Peeling skin syndrome with leukonychia and acral punctate keratoses Pemphigus
1 gene
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1 of 1 corroborated by 2+ sources
CAST(6)
0.100 0.500 1.04e-3 1.74e-3 ✓ sig. Cluster 1 →

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.