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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Aprosencephaly Neural tube defects, folate-sensitive
1 gene
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1 of 1 corroborated by 2+ sources
MTRR(2)
0.125 0.250 1.04e-3 1.74e-3 ✓ sig. Cluster 121 →
Congenital chloride diarrhea Congenital secretory diarrhea
1 gene
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1 of 1 corroborated by 2+ sources
SLC26A3(5)
0.125 0.250 1.04e-3 1.74e-3 ✓ sig. Cluster 172 →
Congenital fusion of ribs Dysphoric mood
1 gene
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DLL3(1)
0.125 0.250 1.04e-3 1.74e-3 ✓ sig. —
Congenital lactic acidosis Hereditary hemophagocytic lymphohistiocytosis
1 gene
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1 of 1 corroborated by 2+ sources
STXBP2(2)
0.125 0.250 1.04e-3 1.74e-3 ✓ sig. —
Anonychia Pachyonychia congenita
1 gene
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1 of 1 corroborated by 2+ sources
KRT17(6)
0.125 0.250 1.04e-3 1.74e-3 ✓ sig. Cluster 160 →
Caroli disease Mainzer-saldino disease
1 gene
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WDR19(1)
0.125 0.250 1.04e-3 1.74e-3 ✓ sig. —
Micropenis Xanthinuria
1 gene
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SRD5A2(1)
0.125 0.250 1.04e-3 1.74e-3 ✓ sig. —
Gastrointestinal neoplasms Hyperemesis gravidarum
1 gene
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1 of 1 corroborated by 2+ sources
GDF15(3)
0.125 0.250 1.04e-3 1.74e-3 ✓ sig. Cluster 41 →
Benign hypercalcemia Hereditary chronic pancreatitis
1 gene
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1 of 1 corroborated by 2+ sources
CASR(2)
0.100 0.500 1.04e-3 1.74e-3 ✓ sig. —
Hyper-immunoglobulin syndrome Pemphigus
1 gene
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CD40(1)
0.100 0.500 1.04e-3 1.74e-3 ✓ sig. —
Body mass index Diastolic heart failure
1 gene
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1 of 1 corroborated by 2+ sources
FTO(3)
0.100 0.500 1.04e-3 1.74e-3 ✓ sig. —
Breast fibrocystic disease Visual impairment
1 gene
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CSMD1(1)
0.100 0.500 1.04e-3 1.74e-3 ✓ sig. Cluster 146 →
Canavan disease Infertility
1 gene
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1 of 1 corroborated by 2+ sources
SPATA22(2)
0.100 0.500 1.04e-3 1.74e-3 ✓ sig. Cluster 242 →
Cataract-glaucoma syndrome Posterior polar cataract
1 gene
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1 of 1 corroborated by 2+ sources
PITX3(4)
0.100 0.500 1.04e-3 1.74e-3 ✓ sig. —
Digestive system neoplasms Genitourinary disease
1 gene
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0.100 0.500 1.04e-3 1.74e-3 ✓ sig. —
Discoid lupus erythematosus Urologic neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
OGG1(2)
0.100 0.500 1.04e-3 1.74e-3 ✓ sig. —
Dna repair-deficiency disorders Pyridoxine dependent epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
PNKP(2)
0.100 0.500 1.04e-3 1.74e-3 ✓ sig. —
Autoimmune pancreatitis Duodenitis
1 gene
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1 of 1 corroborated by 2+ sources
0.100 0.500 1.04e-3 1.74e-3 ✓ sig. Cluster 1 →
Duodenitis Tongue cancer
1 gene
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0.100 0.500 1.04e-3 1.74e-3 ✓ sig. Cluster 1 →
Omodysplasia Robinow syndrome
1 gene
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1 of 1 corroborated by 2+ sources
FZD2(5)
0.100 0.500 1.04e-3 1.74e-3 ✓ sig. Cluster 127 →
Niemann-pick disease Ophthalmoplegia
1 gene
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1 of 1 corroborated by 2+ sources
NPC1(8)
0.100 0.500 1.04e-3 1.74e-3 ✓ sig. —
hereditary nonpolyposis colon cancer Thoracic neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
SMARCA4(2)
0.100 0.500 1.04e-3 1.74e-3 ✓ sig. Cluster 120 →
Congenital nystagmus Usher syndrome type 1
1 gene
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1 of 1 corroborated by 2+ sources
MYO7A(2)
0.100 0.500 1.04e-3 1.74e-3 ✓ sig. —
Congenital sensorineural hearing loss Usher syndrome type 2
1 gene
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1 of 1 corroborated by 2+ sources
USH2A(2)
0.100 0.500 1.04e-3 1.74e-3 ✓ sig. —
Pemphigus Vaginal neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
IL2(2)
0.100 0.500 1.04e-3 1.74e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.