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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Central nervous system disease Sengers syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SOD2(2)
0.125 0.250 1.04e-3 1.74e-3 ✓ sig. —
Carney-stratakis syndrome Skeletal muscle disorder
1 gene
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1 of 1 corroborated by 2+ sources
SDHA(2)
0.125 0.250 1.04e-3 1.74e-3 ✓ sig. Cluster 81 →
Epilepsy with auditory features Focal epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
DEPDC5(3)
0.125 0.250 1.04e-3 1.74e-3 ✓ sig. —
Focal epilepsy Lateral temporal lobe epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
DEPDC5(2)
0.125 0.250 1.04e-3 1.74e-3 ✓ sig. —
Galactokinase deficiency Galactosemia
1 gene
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1 of 1 corroborated by 2+ sources
GALK1(5)
0.125 0.250 1.04e-3 1.74e-3 ✓ sig. —
Auriculocondylar syndrome Overactive bladder
1 gene
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1 of 1 corroborated by 2+ sources
EDN1(7)
0.125 0.250 1.04e-3 1.74e-3 ✓ sig. —
Beta-mannosidosis Hypertyrosinemia
1 gene
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FAH(1)
0.125 0.250 1.04e-3 1.74e-3 ✓ sig. Cluster 247 →
Beta-mannosidosis Tyrosinemia
1 gene
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1 of 1 corroborated by 2+ sources
FAH(7)
0.125 0.250 1.04e-3 1.74e-3 ✓ sig. Cluster 247 →
Sengers syndrome Trichohepatoenteric syndrome
1 gene
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1 of 1 corroborated by 2+ sources
AGK(4)
0.125 0.250 1.04e-3 1.74e-3 ✓ sig. Cluster 412 →
Digenic hemochromatosis Variegate porphyria
1 gene
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1 of 1 corroborated by 2+ sources
HFE(2)
0.125 0.250 1.04e-3 1.74e-3 ✓ sig. —
Coronary vasospasm Ventricular ectopy
1 gene
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NOS3(1)
0.125 0.250 1.04e-3 1.74e-3 ✓ sig. Cluster 315 →
Smith-lemli-opitz syndrome Vertebral, cardiac, renal, and limb defects syndrome
1 gene
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1 of 1 corroborated by 2+ sources
NADSYN1(4)
0.125 0.250 1.04e-3 1.74e-3 ✓ sig. —
Carney-stratakis syndrome Von hippel-lindau syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SDHB(5)
0.125 0.250 1.04e-3 1.74e-3 ✓ sig. —
Bone marrow diseases Ureteral calculi
1 gene
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1 of 1 corroborated by 2+ sources
GSTP1(2)
0.125 0.250 1.04e-3 1.74e-3 ✓ sig. —
Bowen’s disease Bundle branch block
1 gene
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1 of 1 corroborated by 2+ sources
0.125 0.250 1.04e-3 1.74e-3 ✓ sig. —
Bowen’s disease Cecal neoplasms
1 gene
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CCND1(1)
0.125 0.250 1.04e-3 1.74e-3 ✓ sig. Cluster 104 →
Bowen’s disease Von hippel-lindau syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CCND1(5)
0.125 0.250 1.04e-3 1.74e-3 ✓ sig. —
Bronchiolitis Central nervous system disease
1 gene
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1 of 1 corroborated by 2+ sources
IL17A(2)
0.125 0.250 1.04e-3 1.74e-3 ✓ sig. —
Bronchiolitis Extrinsic allergic alveolitis
1 gene
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MUC5B(1)
0.125 0.250 1.04e-3 1.74e-3 ✓ sig. —
Central nervous system demyelinating disease Cerebral cortical atrophy
1 gene
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DARS2(1)
0.125 0.250 1.04e-3 1.74e-3 ✓ sig. —
Clear cell papillary renal cell carcinoma Waardenburg-shah syndrome
1 gene
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1 of 1 corroborated by 2+ sources
MITF(2)
0.125 0.250 1.04e-3 1.74e-3 ✓ sig. —
Congenital secretory diarrhea Pregnancy disorder
1 gene
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1 of 1 corroborated by 2+ sources
SPINT2(3)
0.125 0.250 1.04e-3 1.74e-3 ✓ sig. —
Craniofrontonasal dysplasia Dysphoric mood
1 gene
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1 of 1 corroborated by 2+ sources
EFNB1(7)
0.125 0.250 1.04e-3 1.74e-3 ✓ sig. —
Discordant ventriculoarterial connection Knobloch syndrome
1 gene
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SLC19A1(1)
0.125 0.250 1.04e-3 1.74e-3 ✓ sig. Cluster 113 →
Aprosencephaly Homocystinuria with megaloblastic anemia
1 gene
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1 of 1 corroborated by 2+ sources
MTRR(3)
0.125 0.250 1.04e-3 1.74e-3 ✓ sig. Cluster 121 →

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.