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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Cutaneous mastocytosis Testicular seminoma
1 gene
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1 of 1 corroborated by 2+ sources
KIT(3)
0.056 1.000 1.10e-3 1.83e-3 ✓ sig. —
Asbestosis Thiamine deficiency
1 gene
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1 of 1 corroborated by 2+ sources
0.056 1.000 1.10e-3 1.83e-3 ✓ sig. Cluster 245 →
Asbestosis TPM4-related platelet disorder
1 gene
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1 of 1 corroborated by 2+ sources
TPM4(3)
0.056 1.000 1.10e-3 1.83e-3 ✓ sig. —
Toxic nodular goiter Type a insulin resistance syndrome
1 gene
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1 of 1 corroborated by 2+ sources
INSR(3)
0.056 1.000 1.10e-3 1.83e-3 ✓ sig. —
Cutaneous mastocytosis Urticaria pigmentosa
1 gene
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1 of 1 corroborated by 2+ sources
KIT(3)
0.056 1.000 1.10e-3 1.83e-3 ✓ sig. —
Gaucher disease Visceral acid sphingomyelinase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
SMPD1(2)
0.056 1.000 1.10e-3 1.83e-3 ✓ sig. —
Micrognathism Wormian bones-micrognathia-abnormal dentition-progeroid syndrome
1 gene
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1 of 1 corroborated by 2+ sources
LEMD2(2)
0.056 1.000 1.10e-3 1.83e-3 ✓ sig. —
Chondrodysplasia X-linked dominant chondrodysplasia chassaing-lacombe type
1 gene
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1 of 1 corroborated by 2+ sources
HDAC6(6)
0.056 1.000 1.10e-3 1.83e-3 ✓ sig. Cluster 301 →
Chondrodysplasia X-linked dominant chondrodysplasia punctata
1 gene
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1 of 1 corroborated by 2+ sources
EBP(6)
0.056 1.000 1.10e-3 1.83e-3 ✓ sig. —
Hodgkin disease X-linked hyper-igm syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CD40LG(2)
0.056 1.000 1.10e-3 1.83e-3 ✓ sig. Cluster 131 →
Congenital myelofibrosis with anemia Congenital neutropenia
1 gene
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1 of 1 corroborated by 2+ sources
RBSN(3)
0.056 1.000 1.10e-3 1.83e-3 ✓ sig. Cluster 209 →
Congenital neutropenia Neutrophilic leukemia
1 gene
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1 of 1 corroborated by 2+ sources
CSF3R(2)
0.056 1.000 1.10e-3 1.83e-3 ✓ sig. Cluster 209 →
Congenital neutropenia Neutropenia, nonimmune chronic idiopathic, adult
1 gene
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1 of 1 corroborated by 2+ sources
GFI1(3)
0.056 1.000 1.10e-3 1.83e-3 ✓ sig. Cluster 209 →
Craniofacial anomalies with anterior segment dysgenesis Eye abnormalities
1 gene
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1 of 1 corroborated by 2+ sources
VSX1(5)
0.056 1.000 1.10e-3 1.83e-3 ✓ sig. —
Cutaneous mastocytosis Hemoglobinopathy toms river
1 gene
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1 of 1 corroborated by 2+ sources
HBG2(2)
0.056 1.000 1.10e-3 1.83e-3 ✓ sig. —
Congenital neutropenia Cyclic hematopoiesis
1 gene
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1 of 1 corroborated by 2+ sources
ELANE(2)
0.056 1.000 1.10e-3 1.83e-3 ✓ sig. —
Deafness with congenital heart defects and posterior embryotoxon Eye abnormalities
1 gene
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1 of 1 corroborated by 2+ sources
JAG1(4)
0.056 1.000 1.10e-3 1.83e-3 ✓ sig. —
Dentin dysplasia Tricho-dento-osseous syndrome
1 gene
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1 of 1 corroborated by 2+ sources
DLX3(6)
0.056 1.000 1.10e-3 1.83e-3 ✓ sig. —
Dentin dysplasia Enamel-renal syndrome
1 gene
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1 of 1 corroborated by 2+ sources
FAM20A(2)
0.056 1.000 1.10e-3 1.83e-3 ✓ sig. Cluster 366 →
Congenital diaphragmatic hernia Vesicoureteral reflux
2 genes
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1 of 2 corroborated by 2+ sources
ZFPM2(2), NIPBL(1)
0.035 0.100 1.10e-3 1.83e-3 ✓ sig. —
Cryptorchidism Vesicoureteral reflux
2 genes
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KAT6B(1), NIPBL(1)
0.035 0.100 1.10e-3 1.83e-3 ✓ sig. —
Congenital left-sided heart lesions Spondylosis
2 genes
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DACH1(1), SUMF1(1)
0.037 0.080 1.07e-3 1.79e-3 ✓ sig. —
Coffin-siris syndrome Salivary gland neoplasms
2 genes
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2 of 2 corroborated by 2+ sources
SOX4(6), SOX11(4)
0.033 0.118 1.06e-3 1.77e-3 ✓ sig. —
Aortic disease Osteonecrosis
2 genes
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1 of 2 corroborated by 2+ sources
NTM(1), MMP2(2)
0.035 0.105 1.04e-3 1.74e-3 ✓ sig. —
Genetic peripheral neuropathy Salivary gland disease
1 gene
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1 of 1 corroborated by 2+ sources
0.125 0.250 1.04e-3 1.74e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.