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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Anovulation Dyslipidemias
1 gene
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1 of 1 corroborated by 2+ sources
NR5A2(2)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. Cluster 141 →
MYH-6 related congenital heart defects Sick sinus syndrome
1 gene
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1 of 1 corroborated by 2+ sources
MYH6(4)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. —
MYPN-related myopathy Nemaline myopathy
1 gene
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1 of 1 corroborated by 2+ sources
MYPN(4)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. —
nance-horan syndrome Nuclear cataract
1 gene
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1 of 1 corroborated by 2+ sources
NHS(3)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. Cluster 43 →
Anorexia Nasal obstruction
1 gene
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1 of 1 corroborated by 2+ sources
NPY(2)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. —
Junctional epidermolysis bullosa Naxos disease
1 gene
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1 of 1 corroborated by 2+ sources
JUP(6)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. —
Nemaline myopathy nemaline myopathy 10
1 gene
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1 of 1 corroborated by 2+ sources
LMOD3(7)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. Cluster 51 →
Nemaline myopathy nemaline myopathy 5
1 gene
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1 of 1 corroborated by 2+ sources
TNNT1(6)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. —
Nemaline myopathy nemaline myopathy 6
1 gene
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1 of 1 corroborated by 2+ sources
KBTBD13(7)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. Cluster 51 →
Nemaline myopathy nemaline myopathy 7
1 gene
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1 of 1 corroborated by 2+ sources
CFL2(7)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. Cluster 51 →
Nemaline myopathy nemaline myopathy 8
1 gene
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1 of 1 corroborated by 2+ sources
KLHL40(5)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. Cluster 51 →
Nemaline myopathy nemaline myopathy 9
1 gene
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1 of 1 corroborated by 2+ sources
KLHL41(7)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. Cluster 51 →
Developmental regression neurodevelopmental disorder with hypotonia, epilepsy, and absent speech
1 gene
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1 of 1 corroborated by 2+ sources
UNC13A(2)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. —
neurodevelopmental disorder with nonspecific brain abnormalities and with or without seizures Semilobar holoprosencephaly
1 gene
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1 of 1 corroborated by 2+ sources
DLL1(3)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. Cluster 96 →
Developmental regression neurodevelopmental disorder with speech delay, movement abnormalities, and seizures
1 gene
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1 of 1 corroborated by 2+ sources
UNC13A(2)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. —
neuropathy, hereditary sensory, type 1D Potassium deficiency
1 gene
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1 of 1 corroborated by 2+ sources
ATL1(2)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. Cluster 143 →
Developmental regression NMNAT1-related retinopathy
1 gene
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1 of 1 corroborated by 2+ sources
NMNAT1(2)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. —
NMNAT1-related retinopathy Spondyloepiphyseal dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
NMNAT1(5)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. —
Hypoplastic left heart syndrome NOTCH1-related AOS spectrum disorder
1 gene
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1 of 1 corroborated by 2+ sources
NOTCH1(2)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. —
Lipodystrophy obsolete lethal restrictive dermopathy
1 gene
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1 of 1 corroborated by 2+ sources
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. —
Developmental regression obsolete Stüve-Wiedemann syndrome
1 gene
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1 of 1 corroborated by 2+ sources
LIFR(2)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. —
OFD1-related ciliopathy Spondyloepiphyseal dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
OFD1(2)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. —
Chorea optic atrophy 10 with or without ataxia, intellectual disability, and seizures
1 gene
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1 of 1 corroborated by 2+ sources
RTN4IP1(2)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. Cluster 1 →
Carcinogenesis Osteofibrous dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
MET(5)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. —
Nuclear cataract Other specified diabetes mellitus with unspecified complications
1 gene
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1 of 1 corroborated by 2+ sources
WFS1(3)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.