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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
COG4-congenital disorder of glycosylation Gross motor development delay
1 gene
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1 of 1 corroborated by 2+ sources
COG4(2)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. —
Cognitive impairment with or without cerebellar ataxia Developmental regression
1 gene
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1 of 1 corroborated by 2+ sources
SCN8A(5)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. —
asphyxiating thoracic dystrophy 3 Clinodactyly
1 gene
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1 of 1 corroborated by 2+ sources
DYNC2H1(2)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. —
Atrial tachyarrhythmia, infra-hisian cardiac conduction disease Bronchial disease
1 gene
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1 of 1 corroborated by 2+ sources
TNNI3K(2)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. —
Anorexia Atypical absence epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
NPY(2)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. —
Atypical teratoid rhabdoid tumor Hematologic disease
1 gene
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1 of 1 corroborated by 2+ sources
SMARCB1(2)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. —
Autoinflammation with arthritis and dyskeratosis Corneal neovascularization
1 gene
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1 of 1 corroborated by 2+ sources
NLRP1(5)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. —
autosomal recessive osteopetrosis 1 Dyslipidemias
1 gene
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1 of 1 corroborated by 2+ sources
TCIRG1(4)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. —
B3GALT6-congenital disorder of glycosylation Spondyloepiphyseal dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
B3GALT6(2)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. Cluster 211 →
Barakat syndrome Carcinogenesis
1 gene
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1 of 1 corroborated by 2+ sources
GATA3(2)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. —
Benign congenital myopathy Clinodactyly
1 gene
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DMD(1)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. —
Bifid nail Spondyloepiphyseal dysplasia
1 gene
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OFD1(1)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. —
Esophageal and gastric varices Potassium deficiency
1 gene
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1 of 1 corroborated by 2+ sources
SST(2)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. —
Expressive language delay Gross motor development delay
1 gene
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KLF7(1)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. Cluster 61 →
familial hyperaldosteronism type III Sick sinus syndrome
1 gene
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1 of 1 corroborated by 2+ sources
KCNJ5(3)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. —
Familial partial lipodystrophy Lipodystrophy
1 gene
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1 of 1 corroborated by 2+ sources
CIDEC(6)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. Cluster 71 →
Familial telangiectasia cancer syndrome Seckel syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ATR(6)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. —
Carcinogenesis Gestational trophoblastic disease
1 gene
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POU5F1(1)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. Cluster 3 →
Clinodactyly Glass syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SATB2(2)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. —
Glucocorticoid receptor deficiency/resistance Potassium deficiency
1 gene
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1 of 1 corroborated by 2+ sources
NR3C1(5)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. —
Graves ophthalmopathy gray platelet syndrome
1 gene
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1 of 1 corroborated by 2+ sources
NBEAL2(7)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. Cluster 147 →
20p12.3 microdeletion syndrome Uremia
1 gene
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1 of 1 corroborated by 2+ sources
BMP2(3)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. —
AFG3L2-related optic atrophy and/or spastic ataxia spectrum Chorea
1 gene
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1 of 1 corroborated by 2+ sources
AFG3L2(2)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. —
AKT2-related familial partial lipodystrophy Lipodystrophy
1 gene
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1 of 1 corroborated by 2+ sources
AKT2(3)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. —
Amish nemaline myopathy Nemaline myopathy
1 gene
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1 of 1 corroborated by 2+ sources
TNNT1(7)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.