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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Osteoarthritis Perlman syndrome
1 gene
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1 of 1 corroborated by 2+ sources
DIS3L2(5)
0.001 1.000 4.74e-2 4.92e-2 ✓ sig. —
Osteoarthritis Polydactyly-macrocephaly syndrome
1 gene
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1 of 1 corroborated by 2+ sources
MAX(5)
0.001 1.000 4.74e-2 4.92e-2 ✓ sig. —
Osteoarthritis retinitis pigmentosa 18
1 gene
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1 of 1 corroborated by 2+ sources
PRPF3(2)
0.001 1.000 4.74e-2 4.92e-2 ✓ sig. Cluster 2 →
Osteoarthritis SNUPN-related muscular dystrophy with or without multi-system involvement
1 gene
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1 of 1 corroborated by 2+ sources
SNUPN(2)
0.001 1.000 4.74e-2 4.92e-2 ✓ sig. Cluster 2 →
Osteoarthritis spinocerebellar ataxia type 5
1 gene
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1 of 1 corroborated by 2+ sources
SPTBN2(2)
0.001 1.000 4.74e-2 4.92e-2 ✓ sig. —
Osteoarthritis Osteomalacia
1 gene
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1 of 1 corroborated by 2+ sources
MEPE(3)
0.001 1.000 4.74e-2 4.92e-2 ✓ sig. —
Buratti-harel syndrome Non-specific syndromic intellectual disability
1 gene
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1 of 1 corroborated by 2+ sources
SIAH1(5)
0.003 0.500 4.72e-2 4.91e-2 ✓ sig. Cluster 6 →
Carnitine acetyltransferase deficiency Eczema
1 gene
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1 of 1 corroborated by 2+ sources
CRAT(2)
0.003 0.500 4.68e-2 4.87e-2 ✓ sig. —
Peptic ulcer disease Tessadori-van haaften neurodevelopmental syndrome
1 gene
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1 of 1 corroborated by 2+ sources
H4C5(6)
0.008 0.167 4.62e-2 4.80e-2 ✓ sig. —
Aicardi syndrome Retinitis pigmentosa
1 gene
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1 of 1 corroborated by 2+ sources
TEAD1(2)
0.003 0.500 4.57e-2 4.75e-2 ✓ sig. —
Hemifacial microsomia Peripheral arterial disease
1 gene
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1 of 1 corroborated by 2+ sources
ZYG11B(2)
0.006 0.250 4.52e-2 4.70e-2 ✓ sig. —
Crohn disease hyperphosphatasia with intellectual disability syndrome 4
1 gene
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1 of 1 corroborated by 2+ sources
PGAP3(2)
0.001 1.000 4.48e-2 4.66e-2 ✓ sig. —
Acromelic frontonasal dysostosis Inflammatory bowel disease
1 gene
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1 of 1 corroborated by 2+ sources
ZSWIM6(2)
0.001 1.000 4.48e-2 4.66e-2 ✓ sig. —
ALG11-congenital disorder of glycosylation Crohn disease
1 gene
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1 of 1 corroborated by 2+ sources
ALG11(2)
0.001 1.000 4.48e-2 4.66e-2 ✓ sig. —
ALG11-congenital disorder of glycosylation Inflammatory bowel disease
1 gene
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1 of 1 corroborated by 2+ sources
ALG11(2)
0.001 1.000 4.48e-2 4.66e-2 ✓ sig. —
Alys amyloidosis Crohn disease
1 gene
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LYZ(1)
0.001 1.000 4.48e-2 4.66e-2 ✓ sig. —
Alys amyloidosis Inflammatory bowel disease
1 gene
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LYZ(1)
0.001 1.000 4.48e-2 4.66e-2 ✓ sig. —
Crohn disease RFT1-congenital disorder of glycosylation
1 gene
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1 of 1 corroborated by 2+ sources
RFT1(2)
0.001 1.000 4.48e-2 4.66e-2 ✓ sig. —
Inflammatory bowel disease RFT1-congenital disorder of glycosylation
1 gene
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1 of 1 corroborated by 2+ sources
RFT1(2)
0.001 1.000 4.48e-2 4.66e-2 ✓ sig. —
Inflammatory bowel disease schneckenbecken dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
SLC35D1(2)
0.001 1.000 4.48e-2 4.66e-2 ✓ sig. —
Inflammatory bowel disease scott syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ANO6(2)
0.001 1.000 4.48e-2 4.66e-2 ✓ sig. —
Crohn disease succinic semialdehyde dehydrogenase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
ALDH5A1(2)
0.001 1.000 4.48e-2 4.66e-2 ✓ sig. —
Benign flecked retina Crohn disease
1 gene
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1 of 1 corroborated by 2+ sources
PLA2G5(3)
0.001 1.000 4.48e-2 4.66e-2 ✓ sig. Cluster 28 →
Benign flecked retina Inflammatory bowel disease
1 gene
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1 of 1 corroborated by 2+ sources
PLA2G5(3)
0.001 1.000 4.48e-2 4.66e-2 ✓ sig. Cluster 28 →
Crohn disease neurodevelopmental disorder with short stature, prominent forehead, and feeding difficulties
1 gene
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1 of 1 corroborated by 2+ sources
DPH5(2)
0.001 1.000 4.48e-2 4.66e-2 ✓ sig. Cluster 28 →

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.