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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
focal segmental glomerulosclerosis 4, susceptibility to Hyperparathyroidism
1 gene
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1 of 1 corroborated by 2+ sources
APOL1(2)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. —
B-lymphoblastic leukemia/lymphoma pancytopenia due to IKZF1 mutations
1 gene
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1 of 1 corroborated by 2+ sources
IKZF1(2)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. —
Papillon-lefevre syndrome Periodontal disease
1 gene
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1 of 1 corroborated by 2+ sources
CTSC(6)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. —
Hereditary sensory and autonomic neuropathy Paraparesis
1 gene
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1 of 1 corroborated by 2+ sources
TECPR2(4)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. —
Hyperparathyroidism Parathyroid carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
CDC73(8)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. —
Hyperparathyroidism Parathyroid neoplasm
1 gene
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1 of 1 corroborated by 2+ sources
CDC73(8)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. —
B-lymphoblastic leukemia/lymphoma PAX5-related B lymphopenia and autism spectrum disorder
1 gene
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1 of 1 corroborated by 2+ sources
PAX5(2)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. —
Myosin storage myopathy Pericarditis
1 gene
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1 of 1 corroborated by 2+ sources
MYH7(2)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. —
Biventricular noncompaction cardiomyopathy Pericarditis
1 gene
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MYH7(1)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. —
Carotid intima-media thickness Periodontal disease
1 gene
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1 of 1 corroborated by 2+ sources
PPARG(2)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. —
Angiofollicular ganglionic hyperplasia Periodontal disease
1 gene
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IL6(1)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. —
Angiolymphoid hyperplasia Periodontal disease
1 gene
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IL6(1)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. —
Castleman disease Periodontal disease
1 gene
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1 of 1 corroborated by 2+ sources
IL6(2)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. —
Down syndrome immunodeficiency 114, folate-responsive
1 gene
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1 of 1 corroborated by 2+ sources
SLC19A1(3)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. Cluster 113 →
Inflammatory demyelinating polyneuropathy Neuropathy
1 gene
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CNBD1(1)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. Cluster 146 →
inherited glutathione synthetase deficiency Mouth disease
1 gene
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1 of 1 corroborated by 2+ sources
GSS(3)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. —
IRIDA syndrome Polycythemia
1 gene
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1 of 1 corroborated by 2+ sources
TMPRSS6(2)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. —
isovaleric acidemia Secondary malignant neoplasm
1 gene
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1 of 1 corroborated by 2+ sources
IVD(2)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. Cluster 235 →
Aortic disease juvenile polyposis/hereditary hemorrhagic telangiectasia syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SMAD4(2)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. —
22q11 deletion syndrome Digeorge syndrome
1 gene
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1 of 1 corroborated by 2+ sources
FGF8(2)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. —
Digeorge syndrome Intermittent explosive disorder
1 gene
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1 of 1 corroborated by 2+ sources
COMT(2)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. —
Chromosome 22q11.2 microduplication syndrome Digeorge syndrome
1 gene
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1 of 1 corroborated by 2+ sources
TBX1(5)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. —
Blepharoptosis Dominant hereditary optic atrophy
1 gene
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OPA1(1)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. —
B-lymphoblastic leukemia/lymphoma Early-onset combined immunodeficiency with low ig due to dominant-negative ikaros mutation
1 gene
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IKZF1(1)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. —
EGLN1-related erythrocytosis and pheochromocytoma/paraganglioma predisposition Polycythemia
1 gene
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1 of 1 corroborated by 2+ sources
EGLN1(2)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.