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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
autosomal agammaglobulinemia B-lymphoblastic leukemia/lymphoma
1 gene
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1 of 1 corroborated by 2+ sources
TCF3(2)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. —
autosomal agammaglobulinemia Burkitt lymphoma
1 gene
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1 of 1 corroborated by 2+ sources
TCF3(2)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. Cluster 181 →
autosomal dominant macrothrombocytopenia Blepharoptosis
1 gene
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1 of 1 corroborated by 2+ sources
TUBA4A(2)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. —
B-lymphoblastic leukemia/lymphoma Barakat syndrome
1 gene
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1 of 1 corroborated by 2+ sources
GATA3(3)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. —
A4GALT-congenital disorder of glycosylation Burkitt lymphoma
1 gene
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1 of 1 corroborated by 2+ sources
A4GALT(2)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. —
Alstrom syndrome Down syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ALMS1(3)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. —
Alys amyloidosis Amyloidosis
1 gene
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1 of 1 corroborated by 2+ sources
LYZ(4)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. Cluster 228 →
amyotrophic lateral sclerosis type 22 Blepharoptosis
1 gene
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1 of 1 corroborated by 2+ sources
TUBA4A(2)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. —
Antecubital pterygium syndrome Neuropathy
1 gene
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1 of 1 corroborated by 2+ sources
PSD3(3)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. —
Combined immunodeficiency with autoimmunity and spondylometaphyseal dysplasia Hyperparathyroidism
1 gene
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1 of 1 corroborated by 2+ sources
ACP5(2)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. —
Combined immunodeficiency-megaloblastic anemia due to methylenetetrahydrofolate dehydrogenase 1 deficiency Down syndrome
1 gene
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1 of 1 corroborated by 2+ sources
MTHFD1(2)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. —
B-lymphoblastic leukemia/lymphoma congenital anomalies of kidney and urinary tract syndrome with or without hearing loss, abnormal ears, or developmental delay
1 gene
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1 of 1 corroborated by 2+ sources
PBX1(2)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. —
Burkitt lymphoma congenital anomalies of kidney and urinary tract syndrome with or without hearing loss, abnormal ears, or developmental delay
1 gene
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1 of 1 corroborated by 2+ sources
PBX1(2)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. —
congenital microcephaly - severe encephalopathy - progressive cerebral atrophy syndrome Lipidoses
1 gene
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1 of 1 corroborated by 2+ sources
ASNS(2)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. —
congenital microcephaly - severe encephalopathy - progressive cerebral atrophy syndrome Lipoidosis
1 gene
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1 of 1 corroborated by 2+ sources
ASNS(2)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. —
Childhood apraxia of speech Specific language disorder
1 gene
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1 of 1 corroborated by 2+ sources
FOXP2(3)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. —
ciliary dyskinesia, primary, 44 Pericarditis
1 gene
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1 of 1 corroborated by 2+ sources
NEK10(2)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. Cluster 278 →
Cirrhosis-dystonia-polycythemia-hypermanganesemia syndrome Polycythemia
1 gene
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1 of 1 corroborated by 2+ sources
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. Cluster 105 →
Aortic disease Myhre syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SMAD4(3)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. —
Hereditary sensory and autonomic neuropathy neuropathy, hereditary sensory and autonomic, type 1A
1 gene
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1 of 1 corroborated by 2+ sources
SPTLC1(7)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. Cluster 169 →
Hereditary sensory and autonomic neuropathy neuropathy, hereditary sensory and autonomic, type 1C
1 gene
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1 of 1 corroborated by 2+ sources
SPTLC2(7)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. Cluster 169 →
Hereditary sensory and autonomic neuropathy neuropathy, hereditary sensory and autonomic, type 2A
1 gene
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1 of 1 corroborated by 2+ sources
WNK1(7)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. Cluster 169 →
Hereditary sensory and autonomic neuropathy neuropathy, hereditary sensory, type 1D
1 gene
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1 of 1 corroborated by 2+ sources
ATL1(7)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. —
Hereditary sensory and autonomic neuropathy neuropathy, hereditary sensory, type 1F
1 gene
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1 of 1 corroborated by 2+ sources
ATL3(7)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. Cluster 169 →
Blepharoptosis OPA1-related optic atrophy with or without extraocular features
1 gene
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1 of 1 corroborated by 2+ sources
OPA1(2)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.