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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Bosma arhinia microphthalmia syndrome Cryptorchidism
1 gene
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1 of 1 corroborated by 2+ sources
SMCHD1(2)
0.048 1.000 1.30e-3 2.06e-3 ✓ sig. —
Bulimia Intermittent explosive disorder
1 gene
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COMT(1)
0.048 1.000 1.30e-3 2.06e-3 ✓ sig. Cluster 97 →
Congenital plasminogen activator inhibitor deficiency type 1 Retinopathy of prematurity
1 gene
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1 of 1 corroborated by 2+ sources
0.048 1.000 1.30e-3 2.06e-3 ✓ sig. —
Catecholaminergic polymorphic ventricular tachycardia Congenital-onset steinert myotonic dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
DMPK(2)
0.048 1.000 1.30e-3 2.06e-3 ✓ sig. —
Antiphospholipid syndrome Corpus callosum agenesis with facial anomalies and cerebellar ataxia
1 gene
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1 of 1 corroborated by 2+ sources
FRMD4A(3)
0.048 1.000 1.30e-3 2.06e-3 ✓ sig. —
Congenital diaphragmatic hernia Craniofacial deafness hand syndrome
1 gene
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1 of 1 corroborated by 2+ sources
PAX3(6)
0.048 1.000 1.30e-3 2.06e-3 ✓ sig. —
craniosynostosis 6 Dandy-walker syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ZIC1(3)
0.048 1.000 1.30e-3 2.06e-3 ✓ sig. —
Congenital diaphragmatic hernia Cryptophthalmia
1 gene
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1 of 1 corroborated by 2+ sources
FREM2(2)
0.048 1.000 1.30e-3 2.06e-3 ✓ sig. —
Cryptophthalmia Fraser syndrome
1 gene
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1 of 1 corroborated by 2+ sources
FREM2(6)
0.048 1.000 1.30e-3 2.06e-3 ✓ sig. —
16q24.3 microdeletion syndrome Cryptorchidism
1 gene
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1 of 1 corroborated by 2+ sources
ANKRD11(2)
0.048 1.000 1.30e-3 2.06e-3 ✓ sig. —
Congenital diaphragmatic hernia Cryptotria
1 gene
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FREM2(1)
0.048 1.000 1.30e-3 2.06e-3 ✓ sig. —
Cryptotria Fraser syndrome
1 gene
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1 of 1 corroborated by 2+ sources
FREM2(6)
0.048 1.000 1.30e-3 2.06e-3 ✓ sig. —
immunodeficiency, common variable, 12 Upper respiratory tract disorder
1 gene
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1 of 1 corroborated by 2+ sources
NFKB1(2)
0.048 1.000 1.30e-3 2.06e-3 ✓ sig. Cluster 137 →
immunodeficiency, common variable, 2 Upper respiratory tract disorder
1 gene
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1 of 1 corroborated by 2+ sources
0.048 1.000 1.30e-3 2.06e-3 ✓ sig. —
inherited blood coagulation disorder Platelet-type bleeding disorder
1 gene
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1 of 1 corroborated by 2+ sources
APOLD1(4)
0.048 1.000 1.30e-3 2.06e-3 ✓ sig. Cluster 33 →
Cutis laxa inherited pseudoxanthoma elasticum
1 gene
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1 of 1 corroborated by 2+ sources
ABCC6(2)
0.048 1.000 1.30e-3 2.06e-3 ✓ sig. —
Intellectual developmental disorder dysmorphic macrocephaly Upper respiratory tract disorder
1 gene
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1 of 1 corroborated by 2+ sources
ZBTB7A(2)
0.048 1.000 1.30e-3 2.06e-3 ✓ sig. Cluster 137 →
Congenital diaphragmatic hernia Intellectual developmental disorder hypotonia behavioral
1 gene
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1 of 1 corroborated by 2+ sources
CDK8(4)
0.048 1.000 1.30e-3 2.06e-3 ✓ sig. —
Dandy-walker syndrome joubert syndrome 21
1 gene
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1 of 1 corroborated by 2+ sources
CSPP1(2)
0.048 1.000 1.30e-3 2.06e-3 ✓ sig. Cluster 8 →
Dandy-walker syndrome joubert syndrome 30
1 gene
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1 of 1 corroborated by 2+ sources
ARMC9(2)
0.048 1.000 1.30e-3 2.06e-3 ✓ sig. Cluster 8 →
Catecholaminergic polymorphic ventricular tachycardia dilated cardiomyopathy 1BB
1 gene
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1 of 1 corroborated by 2+ sources
DSG2(2)
0.048 1.000 1.30e-3 2.06e-3 ✓ sig. Cluster 4 →
Catecholaminergic polymorphic ventricular tachycardia dilated cardiomyopathy 1JJ
1 gene
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1 of 1 corroborated by 2+ sources
LAMA4(2)
0.048 1.000 1.30e-3 2.06e-3 ✓ sig. Cluster 4 →
Cryptorchidism Disorder of sex development
1 gene
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1 of 1 corroborated by 2+ sources
RXFP2(2)
0.048 1.000 1.30e-3 2.06e-3 ✓ sig. —
Distal anoctaminopathy Visual disorder
1 gene
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1 of 1 corroborated by 2+ sources
ANO5(2)
0.048 1.000 1.30e-3 2.06e-3 ✓ sig. —
Cutis laxa Ehlers-Danlos syndrome, spondylocheirodysplastic type
1 gene
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1 of 1 corroborated by 2+ sources
0.048 1.000 1.30e-3 2.06e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.