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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Glycoprotein ia deficiency Iron deficiency anemia
1 gene
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ITGA2(1)
0.083 0.500 1.30e-3 2.06e-3 ✓ sig. —
Cavitary optic disk anomaly Delirium
1 gene
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1 of 1 corroborated by 2+ sources
APOE(2)
0.083 0.500 1.30e-3 2.06e-3 ✓ sig. —
Cebalid syndrome Facial dysmorphism syndrome
1 gene
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1 of 1 corroborated by 2+ sources
MN1(6)
0.083 0.500 1.30e-3 2.06e-3 ✓ sig. —
Central nervous system malformation Partial lipodystrophy
1 gene
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1 of 1 corroborated by 2+ sources
LMNB2(2)
0.083 0.500 1.30e-3 2.06e-3 ✓ sig. Cluster 71 →
Childhood-onset spinal muscular atrophy Saldino-noonan syndrome
1 gene
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1 of 1 corroborated by 2+ sources
DYNC1H1(3)
0.083 0.500 1.30e-3 2.06e-3 ✓ sig. —
Beckwith-wiedemann syndrome Chorioretinal atrophy
1 gene
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-(1)
0.083 0.500 1.30e-3 2.06e-3 ✓ sig. Cluster 199 →
Combined immunodeficiency, x-linked Omenn syndrome
1 gene
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1 of 1 corroborated by 2+ sources
IL2RG(5)
0.083 0.500 1.30e-3 2.06e-3 ✓ sig. —
Congenital dyserythropoietic anemia Familial mediterranean fever
1 gene
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ABCB1(1)
0.083 0.500 1.30e-3 2.06e-3 ✓ sig. Cluster 57 →
Congenital mesoblastic nephroma Myelomonocytic leukemia
1 gene
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ETV6(1)
0.083 0.500 1.30e-3 2.06e-3 ✓ sig. —
immunodeficiency 104 Omenn syndrome
1 gene
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1 of 1 corroborated by 2+ sources
IL7R(4)
0.083 0.500 1.30e-3 2.06e-3 ✓ sig. —
Iron deficiency anemia Iron-refractory iron deficiency anemia
1 gene
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1 of 1 corroborated by 2+ sources
TMPRSS6(4)
0.083 0.500 1.30e-3 2.06e-3 ✓ sig. —
Apraxia Developmental delay with variable intellectual disability
1 gene
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1 of 1 corroborated by 2+ sources
JARID2(5)
0.083 0.500 1.30e-3 2.06e-3 ✓ sig. Cluster 380 →
Diaphragm disease Leiomyoma
1 gene
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1 of 1 corroborated by 2+ sources
WNT5B(2)
0.083 0.500 1.30e-3 2.06e-3 ✓ sig. Cluster 49 →
Dubowitz syndrome Omenn syndrome
1 gene
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1 of 1 corroborated by 2+ sources
LIG4(3)
0.083 0.500 1.30e-3 2.06e-3 ✓ sig. —
Angelman syndrome Duplication 15q11-q13 syndrome
1 gene
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1 of 1 corroborated by 2+ sources
UBE3A(7)
0.083 0.500 1.30e-3 2.06e-3 ✓ sig. —
Contracture Soft tissue neoplasms
1 gene
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EPHB1(1)
0.083 0.500 1.30e-3 2.06e-3 ✓ sig. —
Contracture Dermatosparaxis ehlers-danlos syndrome
1 gene
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1 of 1 corroborated by 2+ sources
0.083 0.500 1.30e-3 2.06e-3 ✓ sig. Cluster 52 →
Craniodiaphyseal dysplasia Saldino-mainzer syndrome
1 gene
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1 of 1 corroborated by 2+ sources
IFT140(3)
0.083 0.500 1.30e-3 2.06e-3 ✓ sig. —
Sjogren-larsson syndrome Tongue neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
KRT14(2)
0.083 0.500 1.30e-3 2.06e-3 ✓ sig. Cluster 269 →
Brachycephaly Thyroid hormone resistance
1 gene
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1 of 1 corroborated by 2+ sources
TRHR(2)
0.083 0.500 1.30e-3 2.06e-3 ✓ sig. —
Delirium Tyrosine hydroxylase–deficient dopa-responsive dystonia
1 gene
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1 of 1 corroborated by 2+ sources
TH(2)
0.083 0.500 1.30e-3 2.06e-3 ✓ sig. —
Headache Water intoxication
1 gene
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1 of 1 corroborated by 2+ sources
OXT(2)
0.083 0.500 1.30e-3 2.06e-3 ✓ sig. —
Cornelia de lange syndrome Wilson-turner syndrome
1 gene
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1 of 1 corroborated by 2+ sources
HDAC8(7)
0.083 0.500 1.30e-3 2.06e-3 ✓ sig. Cluster 297 →
Dwarfism Witteveen-kolk syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SIN3A(3)
0.083 0.500 1.30e-3 2.06e-3 ✓ sig. —
Omenn syndrome Partial adenosine deaminase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
ADA(3)
0.083 0.500 1.30e-3 2.06e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.