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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Short rib dysplasia-polydactyly syndrome short-rib thoracic dysplasia 11 with or without polydactyly
1 gene
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1 of 1 corroborated by 2+ sources
DYNC2I2(5)
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. Cluster 22 →
Short rib dysplasia-polydactyly syndrome short-rib thoracic dysplasia 16 with or without polydactyly
1 gene
Show details
1 of 1 corroborated by 2+ sources
IFT52(3)
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. Cluster 22 →
Short rib dysplasia-polydactyly syndrome short-rib thoracic dysplasia 17 with or without polydactyly
1 gene
Show details
1 of 1 corroborated by 2+ sources
DYNLT2B(3)
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. Cluster 22 →
Short rib dysplasia-polydactyly syndrome short-rib thoracic dysplasia 19 with or without polydactyly
1 gene
Show details
1 of 1 corroborated by 2+ sources
IFT81(2)
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. Cluster 22 →
Short rib dysplasia-polydactyly syndrome short-rib thoracic dysplasia 7 with or without polydactyly
1 gene
Show details
1 of 1 corroborated by 2+ sources
WDR35(4)
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. Cluster 22 →
Short rib dysplasia-polydactyly syndrome short-rib thoracic dysplasia 8 with or without polydactyly
1 gene
Show details
1 of 1 corroborated by 2+ sources
DYNC2I1(5)
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. Cluster 22 →
spermatogenic failure 38 Uterine polyp
1 gene
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1 of 1 corroborated by 2+ sources
ARMC2(2)
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. —
Hyperaldosteronism Steroid 11-beta-monooxygenase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
CYP11B1(5)
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. —
Polyneuropathy Sterol carrier protein 2 deficiency
1 gene
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1 of 1 corroborated by 2+ sources
SCP2(5)
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. Cluster 239 →
ARHGAP29-related non-syndromic orofacial cleft Uranostaphyloschisis
1 gene
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1 of 1 corroborated by 2+ sources
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. —
asphyxiating thoracic dystrophy 2 Short rib dysplasia-polydactyly syndrome
1 gene
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1 of 1 corroborated by 2+ sources
IFT80(4)
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. —
Autoimmune thrombocytopenic purpura fraser syndrome 3
1 gene
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1 of 1 corroborated by 2+ sources
GRIP1(2)
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. —
Autoimmune thrombocytopenic purpura Cerebellar hypoplasia
1 gene
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1 of 1 corroborated by 2+ sources
VLDLR(2)
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. —
Autoimmune thrombocytopenic purpura Autoinflammatory syndrome with immunodeficiency
1 gene
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1 of 1 corroborated by 2+ sources
SOCS1(4)
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. Cluster 321 →
Autoimmune thrombocytopenic purpura Autoinflammatory syndrome, familial, with or without immunodeficiency
1 gene
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1 of 1 corroborated by 2+ sources
SOCS1(2)
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. Cluster 321 →
Autoimmune thrombocytopenic purpura Autoimmunity-autoinflammation-immunodeficiency syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SOCS1(2)
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. Cluster 321 →
Beemer-langer syndrome Short rib dysplasia-polydactyly syndrome
1 gene
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1 of 1 corroborated by 2+ sources
IFT80(2)
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. —
thrombocytopenia 4 Transient ischemic attack
1 gene
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1 of 1 corroborated by 2+ sources
CYCS(2)
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. —
cutis laxa, autosomal dominant 1 Williams syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ELN(6)
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. —
Meningioma Winter shortland temple syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SMO(3)
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. Cluster 292 →
Peroxisome biogenesis disorder X-linked cerebral adrenoleukodystrophy
1 gene
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1 of 1 corroborated by 2+ sources
ABCD1(3)
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. —
Uranostaphyloschisis X-linked cleft palate and ankloglossia
1 gene
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1 of 1 corroborated by 2+ sources
TBX22(2)
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. Cluster 282 →
Hyperaldosteronism X-linked non progressive cerebellar ataxia
1 gene
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1 of 1 corroborated by 2+ sources
ATP2B3(4)
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. —
Blood coagulation disorder inherited blood coagulation disorder
1 gene
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1 of 1 corroborated by 2+ sources
APOLD1(2)
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. —
intellectual disability, autosomal dominant 42 Uranostaphyloschisis
1 gene
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1 of 1 corroborated by 2+ sources
GNB1(2)
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.