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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Arthritis Dysbiosis
1 gene
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1 of 1 corroborated by 2+ sources
TLR4(2)
0.037 1.000 1.69e-3 2.53e-3 ✓ sig. Cluster 1 →
Dyskeratosis congenita dyskeratosis congenita, autosomal recessive 2
1 gene
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1 of 1 corroborated by 2+ sources
NHP2(6)
0.037 1.000 1.69e-3 2.53e-3 ✓ sig. Cluster 64 →
Dyskeratosis congenita dyskeratosis congenita, autosomal recessive 3
1 gene
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1 of 1 corroborated by 2+ sources
WRAP53(8)
0.037 1.000 1.69e-3 2.53e-3 ✓ sig. Cluster 64 →
Dyskeratosis congenita dyskeratosis congenita, x-linked
1 gene
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1 of 1 corroborated by 2+ sources
DKC1(7)
0.037 1.000 1.69e-3 2.53e-3 ✓ sig. Cluster 64 →
Early onset progressive leukoencephalopathy-central nervous system calcification-hearing loss-visual impairment syndrome Leukodystrophy
1 gene
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KARS1(1)
0.037 1.000 1.69e-3 2.53e-3 ✓ sig. —
Early-onset progressive leukoencephalopathy-central nervous system calcification-deafness-visual impairment syndrome Leukodystrophy
1 gene
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1 of 1 corroborated by 2+ sources
KARS1(2)
0.037 1.000 1.69e-3 2.53e-3 ✓ sig. —
Coloboma, cleft lip-palate and mental retardation syndrome Congenital ocular coloboma
1 gene
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YAP1(1)
0.037 1.000 1.69e-3 2.53e-3 ✓ sig. —
colobomatous microphthalmia-rhizomelic dysplasia syndrome Congenital ocular coloboma
1 gene
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1 of 1 corroborated by 2+ sources
MAB21L2(2)
0.037 1.000 1.69e-3 2.53e-3 ✓ sig. —
Amino acid metabolism disorder immunodeficiency, common variable, 2
1 gene
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1 of 1 corroborated by 2+ sources
0.037 1.000 1.69e-3 2.53e-3 ✓ sig. —
Dyskinesia inherited neurodegenerative disorder
1 gene
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1 of 1 corroborated by 2+ sources
KIF5A(2)
0.037 1.000 1.69e-3 2.53e-3 ✓ sig. —
Dyskinesia Intellectual developmental disorder dysmorphic skeletal hair
1 gene
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1 of 1 corroborated by 2+ sources
BCL11B(3)
0.037 1.000 1.69e-3 2.53e-3 ✓ sig. —
Intellectual developmental disorder hemoglobin persistence Language development disorders
1 gene
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1 of 1 corroborated by 2+ sources
BCL11A(3)
0.037 1.000 1.69e-3 2.53e-3 ✓ sig. —
Anhedonia Intellectual developmental disorder hypotonia spastic sleep
1 gene
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1 of 1 corroborated by 2+ sources
ANK3(3)
0.037 1.000 1.69e-3 2.53e-3 ✓ sig. —
Dyskinesia Intellectual developmental disorder speech dysmorphic t-cell
1 gene
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1 of 1 corroborated by 2+ sources
BCL11B(5)
0.037 1.000 1.69e-3 2.53e-3 ✓ sig. —
Cardiac arrest intrinsic cardiomyopathy
1 gene
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1 of 1 corroborated by 2+ sources
PLN(2)
0.037 1.000 1.69e-3 2.53e-3 ✓ sig. Cluster 4 →
Amino acid metabolism disorder isovaleric acidemia
1 gene
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1 of 1 corroborated by 2+ sources
IVD(2)
0.037 1.000 1.69e-3 2.53e-3 ✓ sig. —
Cystic kidney disease joubert syndrome 24
1 gene
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1 of 1 corroborated by 2+ sources
TCTN2(2)
0.037 1.000 1.69e-3 2.53e-3 ✓ sig. Cluster 8 →
Congenital ocular coloboma Juvenile myoclonic epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
CILK1(2)
0.037 1.000 1.69e-3 2.53e-3 ✓ sig. —
krabbe disease Leukodystrophy
1 gene
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1 of 1 corroborated by 2+ sources
GALC(2)
0.037 1.000 1.69e-3 2.53e-3 ✓ sig. —
Cystic kidney disease FAT4-related neurodevelopmental disorder
1 gene
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1 of 1 corroborated by 2+ sources
FAT4(2)
0.037 1.000 1.69e-3 2.53e-3 ✓ sig. —
Focal epilepsy with speech disorder and impaired intellectual development Language development disorders
1 gene
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1 of 1 corroborated by 2+ sources
GRIN2A(3)
0.037 1.000 1.69e-3 2.53e-3 ✓ sig. —
glomerulopathy with fibronectin deposits 2 Urethral obstruction
1 gene
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1 of 1 corroborated by 2+ sources
FN1(2)
0.037 1.000 1.69e-3 2.53e-3 ✓ sig. —
glutaric acidemia type 3 Language development disorders
1 gene
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1 of 1 corroborated by 2+ sources
SUGCT(2)
0.037 1.000 1.69e-3 2.53e-3 ✓ sig. —
Leukodystrophy leukodystrophy, hypomyelinating, 18
1 gene
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1 of 1 corroborated by 2+ sources
DEGS1(2)
0.037 1.000 1.69e-3 2.53e-3 ✓ sig. Cluster 100 →
Leukodystrophy leukodystrophy, hypomyelinating, 25
1 gene
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1 of 1 corroborated by 2+ sources
TMEM163(2)
0.037 1.000 1.69e-3 2.53e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.