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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
primary ciliary dyskinesia 5 Teratozoospermia
1 gene
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1 of 1 corroborated by 2+ sources
HYDIN(2)
0.036 1.000 1.75e-3 2.61e-3 ✓ sig. —
Middle ear cholesteatoma Progressive supranuclear palsy
1 gene
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1 of 1 corroborated by 2+ sources
IL2(2)
0.036 1.000 1.75e-3 2.61e-3 ✓ sig. —
Progressive supranuclear palsy Wolcott-rallison syndrome
1 gene
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1 of 1 corroborated by 2+ sources
EIF2AK3(5)
0.036 1.000 1.75e-3 2.61e-3 ✓ sig. Cluster 338 →
Bladder exstrophy and epispadias complex RAB23-related Carpenter syndrome
1 gene
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1 of 1 corroborated by 2+ sources
RAB23(2)
0.036 1.000 1.75e-3 2.61e-3 ✓ sig. —
AKT2-related familial partial lipodystrophy Hypoglycemia
1 gene
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1 of 1 corroborated by 2+ sources
AKT2(2)
0.036 1.000 1.75e-3 2.61e-3 ✓ sig. —
ALG11-congenital disorder of glycosylation Hepatolenticular degeneration
1 gene
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1 of 1 corroborated by 2+ sources
ALG11(2)
0.036 1.000 1.75e-3 2.61e-3 ✓ sig. Cluster 76 →
Alpha-mannosidosis Methylmalonic acidemia
1 gene
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1 of 1 corroborated by 2+ sources
MAN2B1(4)
0.036 1.000 1.75e-3 2.61e-3 ✓ sig. Cluster 246 →
IL21-related infantile inflammatory bowel disease Progressive supranuclear palsy
1 gene
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1 of 1 corroborated by 2+ sources
IL21(2)
0.036 1.000 1.75e-3 2.61e-3 ✓ sig. Cluster 338 →
immune dysregulation, autoimmunity, and autoinflammation Sezary syndrome
1 gene
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1 of 1 corroborated by 2+ sources
PLCG1(2)
0.036 1.000 1.75e-3 2.61e-3 ✓ sig. Cluster 3 →
immunodeficiency 11b with atopic dermatitis Sezary syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CARD11(2)
0.036 1.000 1.75e-3 2.61e-3 ✓ sig. —
immunodeficiency 123 with hpv-related verrucosis Sezary syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CD28(2)
0.036 1.000 1.75e-3 2.61e-3 ✓ sig. —
Hashimoto disease immunodeficiency 60
1 gene
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1 of 1 corroborated by 2+ sources
BACH2(2)
0.036 1.000 1.75e-3 2.61e-3 ✓ sig. —
inborn disorder of cobalamin metabolism and transport Methylmalonic acidemia
1 gene
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1 of 1 corroborated by 2+ sources
MMADHC(7)
0.036 1.000 1.75e-3 2.61e-3 ✓ sig. —
Hashimoto disease Interleukin 6 quantitative trait
1 gene
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1 of 1 corroborated by 2+ sources
IL6R(4)
0.036 1.000 1.75e-3 2.61e-3 ✓ sig. —
Intrauterine growth restriction-short stature-early adult-onset diabetes syndrome Rhabdomyosarcoma
1 gene
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1 of 1 corroborated by 2+ sources
CDKN1C(4)
0.036 1.000 1.75e-3 2.61e-3 ✓ sig. —
Coloboma, cleft lip-palate and mental retardation syndrome Rhabdomyosarcoma
1 gene
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1 of 1 corroborated by 2+ sources
YAP1(2)
0.036 1.000 1.75e-3 2.61e-3 ✓ sig. —
Combined malonic and methylmalonic acidemia Methylmalonic acidemia
1 gene
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1 of 1 corroborated by 2+ sources
ACSF3(6)
0.036 1.000 1.75e-3 2.61e-3 ✓ sig. —
Combined malonic and methylmalonic aciduria Methylmalonic acidemia
1 gene
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1 of 1 corroborated by 2+ sources
ACSF3(3)
0.036 1.000 1.75e-3 2.61e-3 ✓ sig. —
Congenital hypoplasia of penis Cortical development malformation
1 gene
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PHF6(1)
0.036 1.000 1.75e-3 2.61e-3 ✓ sig. —
Aneurysm neonatal/infantile epilepsy syndrome
1 gene
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1 of 1 corroborated by 2+ sources
KCNH5(2)
0.036 1.000 1.75e-3 2.61e-3 ✓ sig. Cluster 12 →
Aneurysm nephrotic syndrome, type 3
1 gene
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1 of 1 corroborated by 2+ sources
PLCE1(2)
0.036 1.000 1.75e-3 2.61e-3 ✓ sig. —
nijmegen breakage syndrome Rhabdomyosarcoma
1 gene
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1 of 1 corroborated by 2+ sources
NBN(2)
0.036 1.000 1.75e-3 2.61e-3 ✓ sig. —
Arthrogryposis, cleft palate, craniosynostosis, and impaired intellectual development Hepatolenticular degeneration
1 gene
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1 of 1 corroborated by 2+ sources
PPP3CA(4)
0.036 1.000 1.75e-3 2.61e-3 ✓ sig. —
Benta disease Sezary syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CARD11(5)
0.036 1.000 1.75e-3 2.61e-3 ✓ sig. —
Methylmalonic acidemia methylmalonic acidemia due to methylmalonyl-CoA epimerase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
MCEE(5)
0.036 1.000 1.75e-3 2.61e-3 ✓ sig. Cluster 246 →

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.