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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Endometrioid carcinoma Lymphatic metastasis
1 gene
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MSLN(1)
0.032 1.000 1.95e-3 2.83e-3 ✓ sig. —
Epilepsy due to perinatal stroke West syndrome
1 gene
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ST3GAL3(1)
0.032 1.000 1.95e-3 2.83e-3 ✓ sig. Cluster 328 →
Cerebellar atrophy hereditary spastic paraplegia 35
1 gene
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1 of 1 corroborated by 2+ sources
FA2H(2)
0.032 1.000 1.95e-3 2.83e-3 ✓ sig. —
hypercholesterolemia, autosomal dominant, 3 Lipoprotein lipase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
PCSK9(2)
0.032 1.000 1.95e-3 2.83e-3 ✓ sig. —
hypercholesterolemia, familial, 1 Lipoprotein lipase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
LDLR(2)
0.032 1.000 1.95e-3 2.83e-3 ✓ sig. —
Hypomyelinating leukodystrophy POLR3B-related disorder
1 gene
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1 of 1 corroborated by 2+ sources
POLR3B(6)
0.032 1.000 1.95e-3 2.83e-3 ✓ sig. —
Hypomyelinating leukodystrophy hypomyelinating leukodystrophy 13
1 gene
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1 of 1 corroborated by 2+ sources
HIKESHI(6)
0.032 1.000 1.95e-3 2.83e-3 ✓ sig. —
Hypomyelinating leukodystrophy hypomyelinating leukodystrophy 2
1 gene
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1 of 1 corroborated by 2+ sources
GJC2(5)
0.032 1.000 1.95e-3 2.83e-3 ✓ sig. —
Hypomyelinating leukodystrophy hypomyelinating leukodystrophy 3
1 gene
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1 of 1 corroborated by 2+ sources
AIMP1(4)
0.032 1.000 1.95e-3 2.83e-3 ✓ sig. —
Hypomyelinating leukodystrophy hypomyelinating leukodystrophy 5
1 gene
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1 of 1 corroborated by 2+ sources
HYCC1(4)
0.032 1.000 1.95e-3 2.83e-3 ✓ sig. Cluster 100 →
Hypomyelinating leukodystrophy hypomyelinating leukodystrophy 9
1 gene
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1 of 1 corroborated by 2+ sources
RARS1(5)
0.032 1.000 1.95e-3 2.83e-3 ✓ sig. Cluster 100 →
Expressive language delay Lymphatic metastasis
1 gene
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1 of 1 corroborated by 2+ sources
KLF7(2)
0.032 1.000 1.95e-3 2.83e-3 ✓ sig. —
glutaryl-CoA dehydrogenase deficiency Hypomyelinating leukodystrophy
1 gene
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1 of 1 corroborated by 2+ sources
GCDH(2)
0.032 1.000 1.95e-3 2.83e-3 ✓ sig. —
Growth restriction, hypoplastic kidneys, alopecia, and distinctive facies Lipoprotein lipase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
ZPR1(4)
0.032 1.000 1.95e-3 2.83e-3 ✓ sig. Cluster 254 →
Congenital cartilage disorder Schmid metaphyseal chondrodysplasia
1 gene
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1 of 1 corroborated by 2+ sources
COL10A1(2)
0.032 1.000 1.95e-3 2.83e-3 ✓ sig. —
Esophageal disease spinocerebellar ataxia type 2
1 gene
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1 of 1 corroborated by 2+ sources
ATXN2(2)
0.032 1.000 1.95e-3 2.83e-3 ✓ sig. —
Congenital cartilage disorder Stickler syndrome, type 4
1 gene
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1 of 1 corroborated by 2+ sources
COL9A1(2)
0.032 1.000 1.95e-3 2.83e-3 ✓ sig. —
Intellectual developmental disorder short stature behavioral Spondylosis
1 gene
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1 of 1 corroborated by 2+ sources
IQSEC1(5)
0.032 1.000 1.95e-3 2.83e-3 ✓ sig. —
lamb-shaffer syndrome Spondylosis
1 gene
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1 of 1 corroborated by 2+ sources
SOX5(2)
0.032 1.000 1.95e-3 2.83e-3 ✓ sig. —
Focal segmental glomerulosclerosis inherited focal segmental glomerulosclerosis
1 gene
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1 of 1 corroborated by 2+ sources
CD2AP(5)
0.033 1.000 1.88e-3 2.76e-3 ✓ sig. —
Congenital myasthenic syndrome Intellectual developmental disorder seizures behavioral
1 gene
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1 of 1 corroborated by 2+ sources
ALG14(6)
0.033 1.000 1.88e-3 2.76e-3 ✓ sig. Cluster 34 →
joubert syndrome 36 Macrogyria
1 gene
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1 of 1 corroborated by 2+ sources
0.033 1.000 1.88e-3 2.76e-3 ✓ sig. Cluster 110 →
autoimmune lymphoproliferative syndrome type 2B Cerebral hemorrhage
1 gene
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1 of 1 corroborated by 2+ sources
CASP8(2)
0.033 1.000 1.88e-3 2.76e-3 ✓ sig. —
CBL-related disorder Vasculitis
1 gene
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1 of 1 corroborated by 2+ sources
CBL(3)
0.033 1.000 1.88e-3 2.76e-3 ✓ sig. —
Charcot-Marie-Tooth disease dominant intermediate E Focal segmental glomerulosclerosis
1 gene
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1 of 1 corroborated by 2+ sources
INF2(6)
0.033 1.000 1.88e-3 2.76e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.