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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Focal onset epileptic seizure Frontal lobe epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
CHRNB2(2)
0.091 0.200 1.95e-3 2.83e-3 ✓ sig. Cluster 273 →
Neuropathy, congenital hypomyelinating Retinitis punctata albescens
1 gene
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1 of 1 corroborated by 2+ sources
RHO(2)
0.091 0.200 1.95e-3 2.83e-3 ✓ sig. —
Cerebellar atrophy with seizures and variable developmental delay complex neurodevelopmental disorder with motor features
1 gene
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1 of 1 corroborated by 2+ sources
EMC1(6)
0.091 0.200 1.95e-3 2.83e-3 ✓ sig. Cluster 58 →
Laryngeal neoplasms Respiratory system neoplasm
1 gene
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1 of 1 corroborated by 2+ sources
ADH1B(2)
0.091 0.200 1.95e-3 2.83e-3 ✓ sig. —
Bile duct disorder Congenital heart malformation
1 gene
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MAML3(1)
0.091 0.200 1.95e-3 2.83e-3 ✓ sig. —
Bronchopneumonia Erythropoietic protoporphyria
1 gene
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1 of 1 corroborated by 2+ sources
BTC(3)
0.091 0.200 1.95e-3 2.83e-3 ✓ sig. Cluster 158 →
Adams-oliver syndrome Aplasia cutis congenita
1 gene
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1 of 1 corroborated by 2+ sources
DLL4(4)
0.091 0.200 1.95e-3 2.83e-3 ✓ sig. —
Paralytic strabismus Telomere syndrome
1 gene
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1 of 1 corroborated by 2+ sources
PARN(2)
0.091 0.200 1.95e-3 2.83e-3 ✓ sig. —
Paraplegia Proximal spinal muscular atrophy
1 gene
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1 of 1 corroborated by 2+ sources
SPG7(2)
0.091 0.200 1.95e-3 2.83e-3 ✓ sig. Cluster 333 →
Ataxia with oculomotor apraxia Proximal spinal muscular atrophy
1 gene
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SETX(1)
0.091 0.200 1.95e-3 2.83e-3 ✓ sig. —
Congenital bile acid synthesis defect Oculopharyngodistal myopathy
1 gene
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1 of 1 corroborated by 2+ sources
ABCD3(7)
0.091 0.200 1.95e-3 2.83e-3 ✓ sig. —
Congenital dyserythropoietic anemia Orthostatic hypotension
1 gene
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1 of 1 corroborated by 2+ sources
ABCB1(2)
0.077 0.333 1.95e-3 2.83e-3 ✓ sig. Cluster 57 →
Cholesterol ester transfer protein deficiency Hypertensive heart disease
1 gene
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1 of 1 corroborated by 2+ sources
SCARB1(2)
0.077 0.333 1.95e-3 2.83e-3 ✓ sig. —
Chorioretinopathy with microcephaly Dwarfism
1 gene
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1 of 1 corroborated by 2+ sources
PLK4(3)
0.077 0.333 1.95e-3 2.83e-3 ✓ sig. —
Chudley-mccullough syndrome Spherocytosis
1 gene
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1 of 1 corroborated by 2+ sources
SPTB(3)
0.077 0.333 1.95e-3 2.83e-3 ✓ sig. —
Cleidocranial dysplasia Tooth abnormalities
1 gene
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1 of 1 corroborated by 2+ sources
RUNX2(6)
0.077 0.333 1.95e-3 2.83e-3 ✓ sig. —
Contracture Geleophysic dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
0.077 0.333 1.95e-3 2.83e-3 ✓ sig. Cluster 52 →
Desbuquois dysplasia Epiphyseal dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
CANT1(5)
0.077 0.333 1.95e-3 2.83e-3 ✓ sig. —
Apraxia Dias-logan syndrome
1 gene
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1 of 1 corroborated by 2+ sources
BCL11A(5)
0.077 0.333 1.95e-3 2.83e-3 ✓ sig. —
Early onset vitamin b6 dependent epilepsy Myelomonocytic leukemia
1 gene
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1 of 1 corroborated by 2+ sources
CBL(5)
0.077 0.333 1.95e-3 2.83e-3 ✓ sig. —
Bone resorption Ovarian diseases
1 gene
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1 of 1 corroborated by 2+ sources
CYP19A1(2)
0.077 0.333 1.95e-3 2.83e-3 ✓ sig. —
Apraxia Marinesco-sjogren syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SIL1(6)
0.077 0.333 1.95e-3 2.83e-3 ✓ sig. Cluster 380 →
Metaphyseal dysplasia Tooth abnormalities
1 gene
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1 of 1 corroborated by 2+ sources
RUNX2(6)
0.077 0.333 1.95e-3 2.83e-3 ✓ sig. —
Estrogen resistance Leiomyoma
1 gene
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1 of 1 corroborated by 2+ sources
ESR1(6)
0.077 0.333 1.95e-3 2.83e-3 ✓ sig. —
Delirium Parkinsonism-dystonia
1 gene
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1 of 1 corroborated by 2+ sources
SLC6A3(4)
0.077 0.333 1.95e-3 2.83e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.