Gene Gene information from NCBI Gene database.
Entrez ID 5825
Gene name ATP binding cassette subfamily D member 3
Gene symbol ABCD3
Synonyms (NCBI Gene)
ABC43CBAS5PMP70PXMP1ZWS2
Chromosome 1
Chromosome location 1p21.3
Summary The protein encoded by this gene is a member of the superfamily of ATP-binding cassette (ABC) transporters. ABC proteins transport various molecules across extra- and intra-cellular membranes. ABC genes are divided into seven distinct subfamilies (ABC1, M
miRNA miRNA information provided by mirtarbase database.
249
miRTarBase ID miRNA Experiments Reference
MIRT030935 hsa-miR-21-5p Microarray 18591254
MIRT758783 hsa-miR-323b-3p CLIP-seq
MIRT758784 hsa-miR-3926 CLIP-seq
MIRT758785 hsa-miR-4438 CLIP-seq
MIRT758786 hsa-miR-5095 CLIP-seq
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
52
GO ID Ontology Definition Evidence Reference
GO:0000038 Process Very long-chain fatty acid metabolic process IDA 29397936
GO:0000166 Function Nucleotide binding IEA
GO:0005324 Function Long-chain fatty acid transmembrane transporter activity IBA
GO:0005324 Function Long-chain fatty acid transmembrane transporter activity IEA
GO:0005324 Function Long-chain fatty acid transmembrane transporter activity IMP 24333844
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
170995 67 ENSG00000117528
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
P28288
Protein name ATP-binding cassette sub-family D member 3 (EC 3.1.2.-) (EC 7.6.2.-) (70 kDa peroxisomal membrane protein) (PMP70)
Protein function Broad substrate specificity ATP-dependent transporter of the ATP-binding cassette (ABC) family that catalyzes the transport of long-chain fatty acids (LCFA)-CoA, dicarboxylic acids-CoA, long-branched-chain fatty acids-CoA and bile acids from the
PDB 8Z0F , 8Z9X
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF06472 ABC_membrane_2 70 338 ABC transporter transmembrane region 2 Family
PF00005 ABC_tran 456 599 ABC transporter Domain
Sequence
Sequence length 659
Interactions View interactions
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
11
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
ABCD3-related disorder Likely benign; Uncertain significance ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
BILE ACID SYNTHESIS DEFECT, CONGENITAL, 5 CTD, Disgenet, HPO
CTD, Disgenet, HPO
CTD, Disgenet, HPO
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Cervical cancer Conflicting classifications of pathogenicity; Benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Clear cell carcinoma of kidney Conflicting classifications of pathogenicity ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Adrenoleukodystrophy Adrenoleukodystrophy BEFREE 11422379, 15800013, 19406244, 20661612, 23671276, 24239766, 9425230
★☆☆☆☆
Found in Text Mining only
Adrenoleukodystrophy Adrenoleukodystrophy LHGDN 17602313
★☆☆☆☆
Found in Text Mining only
Adrenoleukodystrophy Adrenoleukodystrophy Pubtator 20661612, 23671276, 30544401, 7717396, 7876858 Associate
★☆☆☆☆
Found in Text Mining only
Adrenomyeloneuropathy Adrenomyeloneuropathy BEFREE 15800013
★☆☆☆☆
Found in Text Mining only
BILE ACID SYNTHESIS DEFECT, CONGENITAL, 5 Congenital Bile Acid Synthesis Defect GENOMICS_ENGLAND_DG 25168382
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
BILE ACID SYNTHESIS DEFECT, CONGENITAL, 5 Congenital Bile Acid Synthesis Defect CTD_human_DG
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Carcinoma Carcinoma BEFREE 10357777
★☆☆☆☆
Found in Text Mining only
Carcinoma Hepatocellular Hepatocellular carcinoma Pubtator 34651050 Associate
★☆☆☆☆
Found in Text Mining only
Cerebrovascular accident Stroke BEFREE 28647418, 30414298
★☆☆☆☆
Found in Text Mining only
Colorectal Carcinoma Colorectal Cancer CTD_human_DG 22294766
★☆☆☆☆
Found in Text Mining only