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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Bronchitis Young syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CFAP221(3)
0.029 1.000 2.14e-3 3.04e-3 ✓ sig. —
retinitis pigmentosa 47 Uveitis
1 gene
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1 of 1 corroborated by 2+ sources
SAG(3)
0.029 1.000 2.14e-3 3.04e-3 ✓ sig. —
Osteochondrodysplasias Rhizomelic dysplasia, ain-naz type
1 gene
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1 of 1 corroborated by 2+ sources
GNPNAT1(3)
0.029 1.000 2.14e-3 3.04e-3 ✓ sig. Cluster 345 →
Hypoxia Sarcosinemia
1 gene
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1 of 1 corroborated by 2+ sources
SARDH(6)
0.029 1.000 2.14e-3 3.04e-3 ✓ sig. Cluster 21 →
Hemolytic uremic syndrome schimke immuno-osseous dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
0.029 1.000 2.14e-3 3.04e-3 ✓ sig. —
Osteochondrodysplasias Schmid metaphyseal chondrodysplasia
1 gene
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1 of 1 corroborated by 2+ sources
COL10A1(2)
0.029 1.000 2.14e-3 3.04e-3 ✓ sig. —
Chloracne Sebocystomatosis
1 gene
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1 of 1 corroborated by 2+ sources
KRT17(4)
0.029 1.000 2.14e-3 3.04e-3 ✓ sig. —
Colitis severe combined immunodeficiency due to CARMIL2 deficiency
1 gene
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1 of 1 corroborated by 2+ sources
CARMIL2(2)
0.029 1.000 2.14e-3 3.04e-3 ✓ sig. —
Jeune thoracic dystrophy short-rib thoracic dysplasia 11 with or without polydactyly
1 gene
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1 of 1 corroborated by 2+ sources
DYNC2I2(2)
0.029 1.000 2.14e-3 3.04e-3 ✓ sig. Cluster 22 →
Jeune thoracic dystrophy short-rib thoracic dysplasia 16 with or without polydactyly
1 gene
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1 of 1 corroborated by 2+ sources
IFT52(2)
0.029 1.000 2.14e-3 3.04e-3 ✓ sig. Cluster 22 →
Jeune thoracic dystrophy short-rib thoracic dysplasia 17 with or without polydactyly
1 gene
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1 of 1 corroborated by 2+ sources
DYNLT2B(2)
0.029 1.000 2.14e-3 3.04e-3 ✓ sig. Cluster 22 →
Jeune thoracic dystrophy short-rib thoracic dysplasia 19 with or without polydactyly
1 gene
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1 of 1 corroborated by 2+ sources
IFT81(2)
0.029 1.000 2.14e-3 3.04e-3 ✓ sig. Cluster 22 →
Jeune thoracic dystrophy short-rib thoracic dysplasia 8 with or without polydactyly
1 gene
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1 of 1 corroborated by 2+ sources
DYNC2I1(2)
0.029 1.000 2.14e-3 3.04e-3 ✓ sig. Cluster 22 →
Rod-cone dystrophy SNRNP200-related dominant retinopathy
1 gene
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1 of 1 corroborated by 2+ sources
0.029 1.000 2.14e-3 3.04e-3 ✓ sig. —
Colitis sorsby fundus dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
TIMP3(3)
0.029 1.000 2.14e-3 3.04e-3 ✓ sig. —
Osteochondrodysplasias Stickler syndrome, type 4
1 gene
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1 of 1 corroborated by 2+ sources
COL9A1(3)
0.029 1.000 2.14e-3 3.04e-3 ✓ sig. —
Bladder dysfunction Bronchitis
1 gene
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1 of 1 corroborated by 2+ sources
CHRNA3(3)
0.029 1.000 2.14e-3 3.04e-3 ✓ sig. —
Bladder dysfunction Peripheral vascular disease
1 gene
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1 of 1 corroborated by 2+ sources
CHRNA3(3)
0.029 1.000 2.14e-3 3.04e-3 ✓ sig. —
Bone dysplasia with increased bone density Osteochondrodysplasias
1 gene
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1 of 1 corroborated by 2+ sources
SOST(2)
0.029 1.000 2.14e-3 3.04e-3 ✓ sig. —
Bptf-related intellectual disability facial dysmorphism skeletal anomalies syndrome Sarcoma
1 gene
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1 of 1 corroborated by 2+ sources
BPTF(2)
0.029 1.000 2.14e-3 3.04e-3 ✓ sig. —
B-cell chronic lymphocytic leukemia Bowen’s disease
1 gene
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1 of 1 corroborated by 2+ sources
CCND1(2)
0.083 0.250 2.08e-3 2.97e-3 ✓ sig. —
Congenital fusion of ribs Jarcho-levin syndrome
1 gene
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DLL3(1)
0.083 0.250 2.08e-3 2.97e-3 ✓ sig. —
Dysphoric mood Jarcho-levin syndrome
1 gene
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DLL3(1)
0.083 0.250 2.08e-3 2.97e-3 ✓ sig. —
Connective tissue neoplasm Coronary syndrome
1 gene
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LPL(1)
0.083 0.250 2.08e-3 2.97e-3 ✓ sig. —
Chromosomal instability Houge janssens syndrome
1 gene
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1 of 1 corroborated by 2+ sources
PPP2R5C(2)
0.083 0.250 2.08e-3 2.97e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.