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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Bronchitis Expressive language delay
1 gene
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1 of 1 corroborated by 2+ sources
KLF7(2)
0.029 1.000 2.14e-3 3.04e-3 ✓ sig. —
Familial telangiectasia cancer syndrome Sarcoma
1 gene
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1 of 1 corroborated by 2+ sources
ATR(3)
0.029 1.000 2.14e-3 3.04e-3 ✓ sig. —
Fanconi anemia complementation group C Peripheral vascular disease
1 gene
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1 of 1 corroborated by 2+ sources
FANCC(2)
0.029 1.000 2.14e-3 3.04e-3 ✓ sig. —
GNPTG-mucolipidosis Rod-cone dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
GNPTG(2)
0.029 1.000 2.14e-3 3.04e-3 ✓ sig. —
Adenosine kinase deficiency Hypoxia
1 gene
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1 of 1 corroborated by 2+ sources
ADK(3)
0.029 1.000 2.14e-3 3.04e-3 ✓ sig. —
AFG3L2-related optic atrophy and/or spastic ataxia spectrum Hyperkinesia
1 gene
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1 of 1 corroborated by 2+ sources
AFG3L2(2)
0.029 1.000 2.14e-3 3.04e-3 ✓ sig. —
Anus neoplasms Transitional cell carcinoma
1 gene
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IFNB1(1)
0.029 1.000 2.14e-3 3.04e-3 ✓ sig. Cluster 5 →
Cervical dystonia Sarcoma
1 gene
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CIZ1(1)
0.029 1.000 2.14e-3 3.04e-3 ✓ sig. —
Chondromyxoid fibroma Temporal lobe epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
GRM1(3)
0.029 1.000 2.14e-3 3.04e-3 ✓ sig. —
Chromosome 16p13.3 deletion syndrome Transitional cell carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
CREBBP(2)
0.029 1.000 2.14e-3 3.04e-3 ✓ sig. —
Chromosome 5q deletion syndrome Hypoxia
1 gene
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1 of 1 corroborated by 2+ sources
RPS14(2)
0.029 1.000 2.14e-3 3.04e-3 ✓ sig. Cluster 21 →
Chromosome xq25 duplication syndrome Transitional cell carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
STAG2(2)
0.029 1.000 2.14e-3 3.04e-3 ✓ sig. —
Chloracne immunodeficiency 123 with hpv-related verrucosis
1 gene
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1 of 1 corroborated by 2+ sources
CD28(3)
0.029 1.000 2.14e-3 3.04e-3 ✓ sig. —
Colitis inflammatory skin and bowel disease, neonatal, 1
1 gene
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1 of 1 corroborated by 2+ sources
ADAM17(3)
0.029 1.000 2.14e-3 3.04e-3 ✓ sig. Cluster 114 →
Intellectual developmental disorder with retinitis pigmentosa Rod-cone dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
SCAPER(4)
0.029 1.000 2.14e-3 3.04e-3 ✓ sig. —
INTU-related skeletal ciliopathy Jeune thoracic dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
INTU(2)
0.029 1.000 2.14e-3 3.04e-3 ✓ sig. Cluster 22 →
joubert syndrome 21 Meckel-gruber syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CSPP1(4)
0.029 1.000 2.14e-3 3.04e-3 ✓ sig. Cluster 8 →
joubert syndrome 24 Meckel-gruber syndrome
1 gene
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1 of 1 corroborated by 2+ sources
TCTN2(6)
0.029 1.000 2.14e-3 3.04e-3 ✓ sig. Cluster 8 →
joubert syndrome 3 Rod-cone dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
AHI1(2)
0.029 1.000 2.14e-3 3.04e-3 ✓ sig. —
Developmental delay with or without epilepsy Jeune thoracic dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
SPTAN1(3)
0.029 1.000 2.14e-3 3.04e-3 ✓ sig. Cluster 22 →
Dicarboxylic aminoaciduria Temporal lobe epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
SLC1A1(7)
0.029 1.000 2.14e-3 3.04e-3 ✓ sig. —
Dyggve-melchior-clausen syndrome Osteochondrodysplasias
1 gene
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1 of 1 corroborated by 2+ sources
DYM(5)
0.029 1.000 2.14e-3 3.04e-3 ✓ sig. —
Chloracne dyskeratosis congenita and related telomere biology disorder
1 gene
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1 of 1 corroborated by 2+ sources
RPA1(3)
0.029 1.000 2.14e-3 3.04e-3 ✓ sig. —
Early-onset obesity-hyperphagia-severe developmental delay syndrome Hyperkinesia
1 gene
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1 of 1 corroborated by 2+ sources
NTRK2(3)
0.029 1.000 2.14e-3 3.04e-3 ✓ sig. —
Early-onset spastic ataxia-myoclonic epilepsy-neuropathy syndrome Hyperkinesia
1 gene
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1 of 1 corroborated by 2+ sources
AFG3L2(2)
0.029 1.000 2.14e-3 3.04e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.