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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Asbestosis Cyclic neutropenia
1 gene
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1 of 1 corroborated by 2+ sources
CFD(2)
0.053 0.500 2.21e-3 3.11e-3 ✓ sig. —
Complement component deficiency Cyclic neutropenia
1 gene
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1 of 1 corroborated by 2+ sources
CFD(3)
0.053 0.500 2.21e-3 3.11e-3 ✓ sig. —
Congenital neutropenia Cyclic neutropenia
1 gene
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1 of 1 corroborated by 2+ sources
ELANE(5)
0.053 0.500 2.21e-3 3.11e-3 ✓ sig. —
Dementia in huntington’s disease Prion disease
1 gene
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1 of 1 corroborated by 2+ sources
PRNP(3)
0.053 0.500 2.21e-3 3.11e-3 ✓ sig. Cluster 154 →
Coffin-siris syndrome X-linked chondrodysplasia punctata
1 gene
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1 of 1 corroborated by 2+ sources
ARSL(5)
0.053 0.500 2.21e-3 3.11e-3 ✓ sig. —
Asbestosis Dopamine beta-hydroxy­lase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
HSPA5(2)
0.053 0.500 2.21e-3 3.11e-3 ✓ sig. —
Dysautonomia Gaucher disease
1 gene
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1 of 1 corroborated by 2+ sources
ELP1(3)
0.053 0.500 2.21e-3 3.11e-3 ✓ sig. —
Micrognathism non-severe combined immunodeficiency due to polymerase delta deficiency
1 gene
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1 of 1 corroborated by 2+ sources
POLD1(2)
0.053 0.500 2.21e-3 3.11e-3 ✓ sig. —
Chromosome 2q32-q33 deletion syndrome Micrognathism
1 gene
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1 of 1 corroborated by 2+ sources
SATB2(3)
0.053 0.500 2.21e-3 3.11e-3 ✓ sig. —
Coats plus syndrome Toxic nodular goiter
1 gene
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1 of 1 corroborated by 2+ sources
STN1(2)
0.053 0.500 2.21e-3 3.11e-3 ✓ sig. —
Cochlear diseases Male reproductive organ cancer
1 gene
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1 of 1 corroborated by 2+ sources
PCDH15(3)
0.053 0.500 2.21e-3 3.11e-3 ✓ sig. —
Bronchiectasis Congenital bilateral absence of vas deferens
1 gene
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1 of 1 corroborated by 2+ sources
CFTR(6)
0.053 0.500 2.21e-3 3.11e-3 ✓ sig. —
Coffin-siris syndrome Rhabdoid tumor
1 gene
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1 of 1 corroborated by 2+ sources
SMARCB1(6)
0.053 0.500 2.21e-3 3.11e-3 ✓ sig. Cluster 120 →
Hodgkin disease Hyper-immunoglobulin syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CD40(2)
0.053 0.500 2.21e-3 3.11e-3 ✓ sig. Cluster 131 →
Gaucher disease Parkinsonian-pyramidal syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SNCA(3)
0.053 0.500 2.21e-3 3.11e-3 ✓ sig. —
Parkinsonian-pyramidal syndrome Substance-induced psychosis
1 gene
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1 of 1 corroborated by 2+ sources
SNCA(2)
0.053 0.500 2.21e-3 3.11e-3 ✓ sig. —
Complement component deficiency Periodontal ehlers-danlos syndrome
1 gene
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1 of 1 corroborated by 2+ sources
C1S(6)
0.053 0.500 2.21e-3 3.11e-3 ✓ sig. —
Dentin dysplasia Peripheral pulmonary artery stenosis
1 gene
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DLX3(1)
0.053 0.500 2.21e-3 3.11e-3 ✓ sig. —
Atrioventricular block Post-operative myocardial infarction
1 gene
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FHIT(1)
0.053 0.500 2.21e-3 3.11e-3 ✓ sig. —
Gaucher disease Pyruvate kinase deficiency
1 gene
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PKLR(1)
0.053 0.500 2.21e-3 3.11e-3 ✓ sig. —
Chondrodysplasia Refsum disease
1 gene
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1 of 1 corroborated by 2+ sources
PEX7(3)
0.053 0.500 2.21e-3 3.11e-3 ✓ sig. —
Brachydactyly-elbow wrist dysplasia syndrome Micrognathism
1 gene
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1 of 1 corroborated by 2+ sources
PITX1(2)
0.053 0.500 2.21e-3 3.11e-3 ✓ sig. —
Bradyopsia Substance-induced psychosis
1 gene
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1 of 1 corroborated by 2+ sources
RGS9(4)
0.053 0.500 2.21e-3 3.11e-3 ✓ sig. Cluster 13 →
Male reproductive organ cancer Paramyotonia congenita
1 gene
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1 of 1 corroborated by 2+ sources
SCN4A(5)
0.053 0.500 2.21e-3 3.11e-3 ✓ sig. Cluster 163 →
Fanconi-bickel syndrome Neonatal diabetes mellitus
1 gene
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1 of 1 corroborated by 2+ sources
SLC2A2(5)
0.053 0.500 2.21e-3 3.11e-3 ✓ sig. Cluster 36 →

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.