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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Isolated anhidrosis Smooth surface dental caries
1 gene
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1 of 1 corroborated by 2+ sources
ITPR2(3)
0.027 1.000 2.34e-3 3.24e-3 ✓ sig. Cluster 287 →
isolated microphthalmia 6 Microphthalmos
1 gene
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1 of 1 corroborated by 2+ sources
PRSS56(3)
0.027 1.000 2.34e-3 3.24e-3 ✓ sig. Cluster 56 →
KCNH1 associated disorder Smooth surface dental caries
1 gene
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1 of 1 corroborated by 2+ sources
KCNH1(2)
0.027 1.000 2.34e-3 3.24e-3 ✓ sig. —
Cerebellar hypoplasia/atrophy, epilepsy, and global developmental delay Developmental delay with or without epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
SPTAN1(3)
0.027 1.000 2.34e-3 3.24e-3 ✓ sig. —
Diabetic macular edema Ocular hypotension
1 gene
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MRPL19(1)
0.027 1.000 2.34e-3 3.24e-3 ✓ sig. Cluster 84 →
Diets-jongmans syndrome syndromic intellectual disability
1 gene
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1 of 1 corroborated by 2+ sources
KDM3B(5)
0.027 1.000 2.34e-3 3.24e-3 ✓ sig. Cluster 224 →
dilated cardiomyopathy 1BB Ventricular fibrillation
1 gene
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1 of 1 corroborated by 2+ sources
DSG2(2)
0.027 1.000 2.34e-3 3.24e-3 ✓ sig. Cluster 4 →
dilated cardiomyopathy 1HH Distal hereditary motor neuropathy
1 gene
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1 of 1 corroborated by 2+ sources
BAG3(4)
0.027 1.000 2.34e-3 3.24e-3 ✓ sig. —
dilated cardiomyopathy 1W Ventricular fibrillation
1 gene
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1 of 1 corroborated by 2+ sources
VCL(2)
0.027 1.000 2.34e-3 3.24e-3 ✓ sig. —
Distal axonal motor neuropathy-myofibrillar myopathy syndrome Distal hereditary motor neuropathy
1 gene
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1 of 1 corroborated by 2+ sources
HSPB8(6)
0.027 1.000 2.34e-3 3.24e-3 ✓ sig. —
Early-onset seizures-distal limb anomalies-facial dysmorphism-global developmental delay syndrome syndromic intellectual disability
1 gene
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1 of 1 corroborated by 2+ sources
OTUD6B(3)
0.027 1.000 2.34e-3 3.24e-3 ✓ sig. —
Early-onset severe hermansky-pudlak syndrome with hearing loss due to ap3d1 deficiency Emphysema
1 gene
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1 of 1 corroborated by 2+ sources
AP3D1(2)
0.027 1.000 2.34e-3 3.24e-3 ✓ sig. —
Bronchopneumonia Congenital cardiovascular anomaly
1 gene
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SERTM1(1)
0.083 0.200 2.27e-3 3.19e-3 ✓ sig. —
complex hereditary spastic paraplegia Paraplegia
1 gene
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1 of 1 corroborated by 2+ sources
VPS37A(2)
0.083 0.200 2.27e-3 3.19e-3 ✓ sig. —
Cerebellar atrophy with seizures and variable developmental delay Gingival diseases
1 gene
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1 of 1 corroborated by 2+ sources
KCNMA1(4)
0.083 0.200 2.27e-3 3.19e-3 ✓ sig. —
Benign hereditary chorea Cerebellar atrophy with seizures and variable developmental delay
1 gene
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1 of 1 corroborated by 2+ sources
0.083 0.200 2.27e-3 3.19e-3 ✓ sig. —
Osteolysis Paget disease
1 gene
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1 of 1 corroborated by 2+ sources
0.083 0.200 2.27e-3 3.19e-3 ✓ sig. —
Bronchiolitis obliterans Peritonitis
1 gene
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1 of 1 corroborated by 2+ sources
IFNG(2)
0.083 0.200 2.27e-3 3.19e-3 ✓ sig. —
Glucose-6-phosphate dehydrogenase deficiency Peritonitis
1 gene
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1 of 1 corroborated by 2+ sources
IFNG(2)
0.083 0.200 2.27e-3 3.19e-3 ✓ sig. Cluster 87 →
Graft versus host disease Pseudoxanthoma elasticum
1 gene
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1 of 1 corroborated by 2+ sources
XYLT1(2)
0.083 0.200 2.27e-3 3.19e-3 ✓ sig. Cluster 128 →
Autosomal recessive ataxia Emery-dreifuss muscular dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
SYNE1(7)
0.083 0.200 2.27e-3 3.19e-3 ✓ sig. —
Congenital deformity of clavicle Neuropathy, congenital hypomyelinating
1 gene
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1 of 1 corroborated by 2+ sources
CNTNAP1(3)
0.083 0.200 2.27e-3 3.19e-3 ✓ sig. —
Benign prostatic hyperplasia neurodevelopmental disorder with hypotonia, epilepsy, and absent speech
1 gene
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1 of 1 corroborated by 2+ sources
UNC13A(2)
0.028 1.000 2.27e-3 3.19e-3 ✓ sig. —
neurodevelopmental disorder with microcephaly, ataxia, and seizures Primary microcephaly
1 gene
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1 of 1 corroborated by 2+ sources
SARS1(3)
0.028 1.000 2.27e-3 3.19e-3 ✓ sig. —
Benign prostatic hyperplasia neurodevelopmental disorder with speech delay, movement abnormalities, and seizures
1 gene
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1 of 1 corroborated by 2+ sources
UNC13A(2)
0.028 1.000 2.27e-3 3.19e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.