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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Cutaneous squamous cell carcinoma immunodeficiency 60
1 gene
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1 of 1 corroborated by 2+ sources
BACH2(2)
0.026 1.000 2.47e-3 3.37e-3 ✓ sig. —
immunodeficiency 63 with lymphoproliferation and autoimmunity Myasthenia gravis
1 gene
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1 of 1 corroborated by 2+ sources
IL2RB(2)
0.026 1.000 2.47e-3 3.37e-3 ✓ sig. —
Dejerine-sottas disease inclusion body myopathy with Paget disease of bone and frontotemporal dementia
1 gene
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1 of 1 corroborated by 2+ sources
VCP(2)
0.026 1.000 2.47e-3 3.37e-3 ✓ sig. —
Hypertrophic neuropathy inclusion body myopathy with Paget disease of bone and frontotemporal dementia
1 gene
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1 of 1 corroborated by 2+ sources
VCP(2)
0.026 1.000 2.47e-3 3.37e-3 ✓ sig. —
Intellectual developmental disorder movement cerebellar Limb girdle muscular dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
0.026 1.000 2.47e-3 3.37e-3 ✓ sig. —
Developmental delay Intellectual developmental disorder seizures language
1 gene
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1 of 1 corroborated by 2+ sources
SETD1B(3)
0.026 1.000 2.47e-3 3.37e-3 ✓ sig. Cluster 32 →
Dermatitis Interstitial systitis
1 gene
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ADRB2(1)
0.026 1.000 2.47e-3 3.37e-3 ✓ sig. —
Interstitial systitis Myasthenia gravis
1 gene
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ADRB2(1)
0.026 1.000 2.47e-3 3.37e-3 ✓ sig. —
isolated microphthalmia 6 Microphthalmia
1 gene
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1 of 1 corroborated by 2+ sources
PRSS56(4)
0.026 1.000 2.47e-3 3.37e-3 ✓ sig. Cluster 56 →
Cholangiocarcinoma KCND2-related neurodevelopmental disorder with or without seizures
1 gene
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1 of 1 corroborated by 2+ sources
KCND2(2)
0.026 1.000 2.47e-3 3.37e-3 ✓ sig. —
Kidney atrophy Microphthalmia
1 gene
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0.026 1.000 2.47e-3 3.37e-3 ✓ sig. —
Kidney atrophy Vesicoureteral reflux
1 gene
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0.026 1.000 2.47e-3 3.37e-3 ✓ sig. —
LAMA2-related muscular dystrophy Limb girdle muscular dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
LAMA2(2)
0.026 1.000 2.47e-3 3.37e-3 ✓ sig. —
Laryngeal hypoplasia Vesicoureteral reflux
1 gene
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1 of 1 corroborated by 2+ sources
FOXP4(2)
0.026 1.000 2.47e-3 3.37e-3 ✓ sig. —
Brooke-spiegler syndrome Uterine neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
CYLD(6)
0.026 1.000 2.47e-3 3.37e-3 ✓ sig. —
CACNA2D4-related retinopathy Cone dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
0.026 1.000 2.47e-3 3.37e-3 ✓ sig. —
Cardiac and skeletal myopathy Left ventricular noncompaction cardiomyopathy
1 gene
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1 of 1 corroborated by 2+ sources
ACTN2(2)
0.026 1.000 2.47e-3 3.37e-3 ✓ sig. Cluster 4 →
cardiomyopathy, dilated, 2e Left ventricular noncompaction cardiomyopathy
1 gene
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1 of 1 corroborated by 2+ sources
JPH2(2)
0.026 1.000 2.47e-3 3.37e-3 ✓ sig. Cluster 4 →
cardiomyopathy, dilated, 2l Left ventricular noncompaction cardiomyopathy
1 gene
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1 of 1 corroborated by 2+ sources
LDB3(2)
0.026 1.000 2.47e-3 3.37e-3 ✓ sig. —
Carnitine deficiency Dermatitis
1 gene
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1 of 1 corroborated by 2+ sources
SLC22A5(3)
0.026 1.000 2.47e-3 3.37e-3 ✓ sig. —
arrhythmogenic right ventricular dysplasia 5 Left ventricular noncompaction cardiomyopathy
1 gene
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1 of 1 corroborated by 2+ sources
TMEM43(2)
0.026 1.000 2.47e-3 3.37e-3 ✓ sig. —
Ataxia with intention tremor and hypotonia Uterine neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
POU4F1(4)
0.026 1.000 2.47e-3 3.37e-3 ✓ sig. —
Autoinflammation with episodic fever and immune dysregulation Dermatitis
1 gene
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1 of 1 corroborated by 2+ sources
SHARPIN(5)
0.026 1.000 2.47e-3 3.37e-3 ✓ sig. Cluster 16 →
autosomal dominant slowed nerve conduction velocity Vesicoureteral reflux
1 gene
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1 of 1 corroborated by 2+ sources
0.026 1.000 2.47e-3 3.37e-3 ✓ sig. —
Axial spondylometaphyseal dysplasia Cone dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
CFAP410(3)
0.026 1.000 2.47e-3 3.37e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.