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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
amyotrophic lateral sclerosis type 10 Degenerative disorder
1 gene
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1 of 1 corroborated by 2+ sources
TARDBP(2)
0.024 1.000 2.60e-3 3.51e-3 ✓ sig. —
amyotrophic lateral sclerosis type 6 Degenerative disorder
1 gene
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1 of 1 corroborated by 2+ sources
FUS(2)
0.024 1.000 2.60e-3 3.51e-3 ✓ sig. —
Apolipoprotein a-ii amyloidosis Hyperlipoproteinemia
1 gene
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1 of 1 corroborated by 2+ sources
APOA2(3)
0.024 1.000 2.60e-3 3.51e-3 ✓ sig. —
Apolipoprotein a-ii deficiency Hyperlipoproteinemia
1 gene
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1 of 1 corroborated by 2+ sources
APOA2(2)
0.024 1.000 2.60e-3 3.51e-3 ✓ sig. —
Apolipoprotein a5 deficiency Hyperlipoproteinemia
1 gene
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1 of 1 corroborated by 2+ sources
APOA5(6)
0.024 1.000 2.60e-3 3.51e-3 ✓ sig. —
Apolipoprotein c-ii deficiency Hyperlipoproteinemia
1 gene
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1 of 1 corroborated by 2+ sources
APOC2(6)
0.024 1.000 2.60e-3 3.51e-3 ✓ sig. Cluster 141 →
Apolipoprotein c-iii deficiency Hyperlipoproteinemia
1 gene
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1 of 1 corroborated by 2+ sources
APOC3(4)
0.024 1.000 2.60e-3 3.51e-3 ✓ sig. —
Interstitial cystitis Thiopurine immunosuppressant-induced pancreatitis
1 gene
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0.024 1.000 2.60e-3 3.51e-3 ✓ sig. Cluster 1 →
Generalized anxiety disorder Tolchin-le caignec syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SOX6(4)
0.024 1.000 2.60e-3 3.51e-3 ✓ sig. Cluster 69 →
Neuromuscular disease Triose phosphate isomerase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
TPI1(6)
0.024 1.000 2.60e-3 3.51e-3 ✓ sig. —
Neuromuscular disease Trismus-pseudocamptodactyly syndrome
1 gene
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1 of 1 corroborated by 2+ sources
MYH8(3)
0.024 1.000 2.60e-3 3.51e-3 ✓ sig. —
Nephronophthisis nephronophthisis 1
1 gene
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1 of 1 corroborated by 2+ sources
NPHP1(6)
0.024 1.000 2.60e-3 3.51e-3 ✓ sig. Cluster 8 →
Nephronophthisis nephronophthisis 12
1 gene
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1 of 1 corroborated by 2+ sources
TTC21B(5)
0.024 1.000 2.60e-3 3.51e-3 ✓ sig. —
Nephronophthisis nephronophthisis 16
1 gene
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1 of 1 corroborated by 2+ sources
ANKS6(7)
0.024 1.000 2.60e-3 3.51e-3 ✓ sig. —
Nephronophthisis nephronophthisis 2
1 gene
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1 of 1 corroborated by 2+ sources
INVS(6)
0.024 1.000 2.60e-3 3.51e-3 ✓ sig. Cluster 8 →
Nephronophthisis nephronophthisis 20
1 gene
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1 of 1 corroborated by 2+ sources
MAPKBP1(6)
0.024 1.000 2.60e-3 3.51e-3 ✓ sig. Cluster 8 →
Nephronophthisis nephronophthisis 4
1 gene
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1 of 1 corroborated by 2+ sources
NPHP4(7)
0.024 1.000 2.60e-3 3.51e-3 ✓ sig. Cluster 8 →
Nephronophthisis nephronophthisis 7
1 gene
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1 of 1 corroborated by 2+ sources
GLIS2(6)
0.024 1.000 2.60e-3 3.51e-3 ✓ sig. Cluster 8 →
nephrotic syndrome 14 Uveal melanoma
1 gene
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1 of 1 corroborated by 2+ sources
SGPL1(2)
0.024 1.000 2.60e-3 3.51e-3 ✓ sig. Cluster 162 →
Interstitial cystitis neurodevelopmental disorder with microcephaly, seizures, and cortical atrophy
1 gene
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1 of 1 corroborated by 2+ sources
VARS1(2)
0.024 1.000 2.60e-3 3.51e-3 ✓ sig. Cluster 1 →
Myasthenic syndrome neuronopathy, distal hereditary motor, type 7A
1 gene
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1 of 1 corroborated by 2+ sources
SLC5A7(4)
0.024 1.000 2.60e-3 3.51e-3 ✓ sig. Cluster 34 →
immunodeficiency 109 with lymphoproliferation Kidney neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
TNFRSF9(2)
0.024 1.000 2.60e-3 3.51e-3 ✓ sig. Cluster 5 →
Intellectual developmental disorder seizures behavioral Myasthenic syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ALG14(4)
0.024 1.000 2.60e-3 3.51e-3 ✓ sig. Cluster 34 →
INTU-related skeletal ciliopathy Nephronophthisis
1 gene
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1 of 1 corroborated by 2+ sources
INTU(2)
0.024 1.000 2.60e-3 3.51e-3 ✓ sig. —
kidney disorder Nephronophthisis
1 gene
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1 of 1 corroborated by 2+ sources
SLC41A1(2)
0.024 1.000 2.60e-3 3.51e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.