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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Diabetic eye disease Thiopurine immunosuppressant-induced pancreatitis
1 gene
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0.020 1.000 3.12e-3 4.10e-3 ✓ sig. —
Polycystic kidney disease thrombocytopenia 6
1 gene
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1 of 1 corroborated by 2+ sources
SRC(3)
0.020 1.000 3.12e-3 4.10e-3 ✓ sig. —
frontorhiny Neural tube defect
1 gene
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1 of 1 corroborated by 2+ sources
ALX3(3)
0.020 1.000 3.12e-3 4.10e-3 ✓ sig. —
GRHL3-related orofacial clefting Neural tube defect
1 gene
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1 of 1 corroborated by 2+ sources
GRHL3(3)
0.020 1.000 3.12e-3 4.10e-3 ✓ sig. —
Endometrioid carcinoma Genetic predisposition to disease
1 gene
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MSLN(1)
0.020 1.000 3.12e-3 4.10e-3 ✓ sig. —
Intellectual developmental disorder dysmorphic hypotonia Neural tube defect
1 gene
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1 of 1 corroborated by 2+ sources
KMT5B(2)
0.020 1.000 3.12e-3 4.10e-3 ✓ sig. —
Gastrointestinal stromal tumor immunodeficiency 18
1 gene
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1 of 1 corroborated by 2+ sources
CD3E(2)
0.021 1.000 3.05e-3 4.03e-3 ✓ sig. —
Hypogonadotropic hypogonadism Intellectual developmental disorder microcephaly ocular
1 gene
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1 of 1 corroborated by 2+ sources
SOX11(4)
0.021 1.000 3.05e-3 4.03e-3 ✓ sig. —
Hypogonadotropic hypogonadism Isolated follicle-stimulating hormone deficiency
1 gene
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1 of 1 corroborated by 2+ sources
FSHB(5)
0.021 1.000 3.05e-3 4.03e-3 ✓ sig. —
Rolandic epilepsy self-limited familial neonatal epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
KCNQ3(2)
0.021 1.000 3.05e-3 4.03e-3 ✓ sig. —
Hypogonadotropic hypogonadism SOX11-related complex neurodevelopmental disorder with or without congenital anomalies
1 gene
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1 of 1 corroborated by 2+ sources
SOX11(2)
0.021 1.000 3.05e-3 4.03e-3 ✓ sig. —
Myoclonus-renal failure syndrome Rolandic epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
SCARB2(2)
0.021 1.000 3.05e-3 4.03e-3 ✓ sig. —
myoglobinuria, acute recurrent, autosomal recessive Neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
LPIN1(2)
0.021 1.000 3.05e-3 4.03e-3 ✓ sig. —
Gastrointestinal stromal tumor nephronophthisis 7
1 gene
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1 of 1 corroborated by 2+ sources
GLIS2(2)
0.021 1.000 3.05e-3 4.03e-3 ✓ sig. —
Gastrointestinal stromal tumor orofaciodigital syndrome type 14
1 gene
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1 of 1 corroborated by 2+ sources
C2CD3(2)
0.021 1.000 3.05e-3 4.03e-3 ✓ sig. —
congenital myasthenic syndrome 7 Mitral valve prolapse
1 gene
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1 of 1 corroborated by 2+ sources
SYT2(2)
0.021 1.000 3.05e-3 4.03e-3 ✓ sig. —
Cortical dysplasia-focal epilepsy syndrome Rolandic epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
CNTNAP2(4)
0.021 1.000 3.05e-3 4.03e-3 ✓ sig. —
1p21.3 microdeletion syndrome Head and neck neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
DPYD(3)
0.021 1.000 3.05e-3 4.03e-3 ✓ sig. —
Acrocapitofemoral dysplasia Gastrointestinal stromal tumor
1 gene
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1 of 1 corroborated by 2+ sources
IHH(2)
0.021 1.000 3.05e-3 4.03e-3 ✓ sig. —
acute myeloid leukemia Head and neck neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
CEBPA(2)
0.021 1.000 3.05e-3 4.03e-3 ✓ sig. —
Alveolar capillary dysplasia Gastrointestinal stromal tumor
1 gene
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1 of 1 corroborated by 2+ sources
FOXF1(2)
0.021 1.000 3.05e-3 4.03e-3 ✓ sig. —
megalencephaly-polymicrogyria-polydactyly-hydrocephalus syndrome 3 Neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
CCND2(2)
0.021 1.000 3.05e-3 4.03e-3 ✓ sig. —
ASAH1-related sphingolipidosis Rolandic epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
ASAH1(2)
0.021 1.000 3.05e-3 4.03e-3 ✓ sig. —
Chondrodysplasia-difference of sex development syndrome Gastrointestinal stromal tumor
1 gene
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1 of 1 corroborated by 2+ sources
HHAT(2)
0.021 1.000 3.05e-3 4.03e-3 ✓ sig. —
Chondrodysplasia-pseudohypohermaphroditism syndrome Gastrointestinal stromal tumor
1 gene
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1 of 1 corroborated by 2+ sources
HHAT(3)
0.021 1.000 3.05e-3 4.03e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.