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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Differentiated thyroid carcinoma hereditary sensory and autonomic neuropathy type 4
1 gene
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1 of 1 corroborated by 2+ sources
NTRK1(2)
0.020 1.000 3.18e-3 4.17e-3 ✓ sig. —
Differentiated thyroid carcinoma Hip dislocation-facial dysmorphism syndrome
1 gene
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1 of 1 corroborated by 2+ sources
TRIM33(2)
0.020 1.000 3.18e-3 4.17e-3 ✓ sig. —
Differentiated thyroid carcinoma Hurthle cell thyroid cancer
1 gene
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1 of 1 corroborated by 2+ sources
NDUFA13(2)
0.020 1.000 3.18e-3 4.17e-3 ✓ sig. Cluster 130 →
Edema hyper-ige syndrome 6, autosomal dominant, with recurrent infections
1 gene
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1 of 1 corroborated by 2+ sources
STAT6(2)
0.020 1.000 3.18e-3 4.17e-3 ✓ sig. —
Lynch syndrome RAD51D-related cancer predisposition
1 gene
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1 of 1 corroborated by 2+ sources
RAD51D(2)
0.020 1.000 3.18e-3 4.17e-3 ✓ sig. —
Lynch syndrome thrombocytopenia 10
1 gene
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1 of 1 corroborated by 2+ sources
PTPRJ(2)
0.020 1.000 3.18e-3 4.17e-3 ✓ sig. —
Bone fragility with contractures, arterial rupture, and deafness X-linked osteoporosis
1 gene
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1 of 1 corroborated by 2+ sources
PLS3(4)
0.020 1.000 3.18e-3 4.17e-3 ✓ sig. —
Sleep apnea Xia-gibbs syndrome
1 gene
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1 of 1 corroborated by 2+ sources
AHDC1(3)
0.020 1.000 3.18e-3 4.17e-3 ✓ sig. —
Colorectal adenomatous polyposis Lynch syndrome
1 gene
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1 of 1 corroborated by 2+ sources
MUTYH(2)
0.020 1.000 3.18e-3 4.17e-3 ✓ sig. —
colorectal cancer, hereditary nonpolyposis, type 7 Lynch syndrome
1 gene
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1 of 1 corroborated by 2+ sources
MLH3(6)
0.020 1.000 3.18e-3 4.17e-3 ✓ sig. —
Congenital absence of breast with absent nipple Hypertrophy
1 gene
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1 of 1 corroborated by 2+ sources
PTPRF(2)
0.020 1.000 3.18e-3 4.17e-3 ✓ sig. —
AHDC1-related intellectual disability - obstructive sleep apnea - mild dysmorphism syndrome Sleep apnea
1 gene
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1 of 1 corroborated by 2+ sources
AHDC1(2)
0.020 1.000 3.18e-3 4.17e-3 ✓ sig. —
Arboleda-tham syndrome Medulloblastoma
1 gene
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1 of 1 corroborated by 2+ sources
KAT6A(2)
0.020 1.000 3.18e-3 4.17e-3 ✓ sig. —
Arthrogryposis, cleft palate, craniosynostosis, and impaired intellectual development Hypertrophy
1 gene
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1 of 1 corroborated by 2+ sources
PPP3CA(4)
0.020 1.000 3.18e-3 4.17e-3 ✓ sig. —
B3GALT6-congenital disorder of glycosylation Bone fragility with contractures, arterial rupture, and deafness
1 gene
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1 of 1 corroborated by 2+ sources
B3GALT6(2)
0.020 1.000 3.18e-3 4.17e-3 ✓ sig. —
bamforth-lazarus syndrome Differentiated thyroid carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
FOXE1(2)
0.020 1.000 3.18e-3 4.17e-3 ✓ sig. —
Differentiated thyroid carcinoma neuroblastoma, susceptibility to, 3
1 gene
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1 of 1 corroborated by 2+ sources
ALK(2)
0.020 1.000 3.18e-3 4.17e-3 ✓ sig. —
neurodevelopmental disorder with microcephaly, seizures, and cortical atrophy Ocular hypertension
1 gene
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1 of 1 corroborated by 2+ sources
VARS1(2)
0.020 1.000 3.18e-3 4.17e-3 ✓ sig. —
Hypertrophy neutral lipid storage myopathy
1 gene
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1 of 1 corroborated by 2+ sources
PNPLA2(2)
0.020 1.000 3.18e-3 4.17e-3 ✓ sig. —
immunodeficiency 97 with autoinflammation Medulloblastoma
1 gene
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1 of 1 corroborated by 2+ sources
PIK3CG(2)
0.020 1.000 3.18e-3 4.17e-3 ✓ sig. Cluster 41 →
intellectual developmental disorder, autosomal dominant 65 Medulloblastoma
1 gene
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1 of 1 corroborated by 2+ sources
KDM4B(2)
0.020 1.000 3.18e-3 4.17e-3 ✓ sig. Cluster 41 →
karyomegalic interstitial nephritis Lynch syndrome
1 gene
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1 of 1 corroborated by 2+ sources
FAN1(3)
0.020 1.000 3.18e-3 4.17e-3 ✓ sig. —
Edema lichtenstein-knorr syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SLC9A1(2)
0.020 1.000 3.18e-3 4.17e-3 ✓ sig. —
lissencephaly spectrum disorder with complex brainstem malformation Sleep apnea
1 gene
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1 of 1 corroborated by 2+ sources
MACF1(2)
0.020 1.000 3.18e-3 4.17e-3 ✓ sig. —
frank-ter haar syndrome Ocular hypertension
1 gene
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1 of 1 corroborated by 2+ sources
0.020 1.000 3.18e-3 4.17e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.