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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Intellectual developmental disorder seizures dysmorphic gait Scoliosis
1 gene
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1 of 1 corroborated by 2+ sources
WDR26(2)
0.001 1.000 6.71e-2 6.85e-2 —
Keratosis linearis-ichthyosis congenita-sclerosing keratoderma syndrome Scoliosis
1 gene
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1 of 1 corroborated by 2+ sources
POMP(6)
0.001 1.000 6.71e-2 6.85e-2 —
Delayed sleep phase syndrome Scoliosis
1 gene
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1 of 1 corroborated by 2+ sources
CRY1(3)
0.001 1.000 6.71e-2 6.85e-2 —
glycosylphosphatidylinositol biosynthesis defect 17 Scoliosis
1 gene
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1 of 1 corroborated by 2+ sources
PIGH(2)
0.001 1.000 6.71e-2 6.85e-2 —
gaze palsy, familial horizontal, with progressive scoliosis 1 Scoliosis
1 gene
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1 of 1 corroborated by 2+ sources
ROBO3(2)
0.001 1.000 6.71e-2 6.85e-2 —
Breast neoplasms Progressive arterial occlusive disease with hypertension
1 gene
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1 of 1 corroborated by 2+ sources
DAP3(2)
0.002 0.500 6.60e-2 6.75e-2 —
3-methylcrotonyl-coa carboxylase deficiency Substance abuse
1 gene
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1 of 1 corroborated by 2+ sources
MCCC2(5)
0.002 0.500 6.59e-2 6.74e-2 Cluster 2 →
Acces syndrome Colorectal cancer
1 gene
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1 of 1 corroborated by 2+ sources
UBA2(3)
0.001 1.000 6.34e-2 6.48e-2 —
Acantholytic blistering of oral and laryngeal mucosa Colorectal cancer
1 gene
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1 of 1 corroborated by 2+ sources
DSG3(4)
0.001 1.000 6.34e-2 6.48e-2 —
Colorectal cancer GPR143-related foveal hypoplasia
1 gene
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1 of 1 corroborated by 2+ sources
GPR143(2)
0.001 1.000 6.34e-2 6.48e-2 —
Colorectal cancer glycogen storage disease VI
1 gene
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1 of 1 corroborated by 2+ sources
PYGL(2)
0.001 1.000 6.34e-2 6.48e-2 —
Chromosome 19q13.11 deletion syndrome Colorectal cancer
1 gene
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1 of 1 corroborated by 2+ sources
UBA2(2)
0.001 1.000 6.34e-2 6.48e-2 —
Colorectal cancer pili torti-developmental delay-neurological abnormalities syndrome
1 gene
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1 of 1 corroborated by 2+ sources
HEPHL1(2)
0.001 1.000 6.34e-2 6.48e-2 Cluster 20 →
Colorectal cancer Hypochromic sideroblastic anemia
1 gene
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1 of 1 corroborated by 2+ sources
STEAP3(6)
0.001 1.000 6.34e-2 6.48e-2 —
Colorectal cancer spinocerebellar ataxia, autosomal recessive 23
1 gene
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1 of 1 corroborated by 2+ sources
TDP2(2)
0.001 1.000 6.34e-2 6.48e-2 —
Colorectal cancer Rin2 syndrome
1 gene
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1 of 1 corroborated by 2+ sources
RIN2(5)
0.001 1.000 6.34e-2 6.48e-2 —
Colorectal cancer Intellectual developmental disorder growth metabolic
1 gene
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1 of 1 corroborated by 2+ sources
DIP2B(3)
0.001 1.000 6.34e-2 6.48e-2 —
Colorectal cancer Osteootohepatoenteric syndrome
1 gene
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1 of 1 corroborated by 2+ sources
UNC45A(5)
0.001 1.000 6.34e-2 6.48e-2 —
Colorectal cancer neurodevelopmental disorder with hypotonia, facial dysmorphism, and brain abnormalities
1 gene
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1 of 1 corroborated by 2+ sources
PPP1R21(2)
0.001 1.000 6.34e-2 6.48e-2 —
Colorectal cancer neuropathy, hereditary sensory and autonomic, type 1C
1 gene
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1 of 1 corroborated by 2+ sources
SPTLC2(2)
0.001 1.000 6.34e-2 6.48e-2 —
Color vision deficiency goldberg-shprintzen syndrome
1 gene
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1 of 1 corroborated by 2+ sources
KIFBP(2)
0.001 1.000 6.27e-2 6.42e-2 —
Color vision deficiency GNAT2-related retinopathy
1 gene
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1 of 1 corroborated by 2+ sources
GNAT2(3)
0.001 1.000 6.27e-2 6.42e-2 —
colobomatous microphthalmia-rhizomelic dysplasia syndrome Color vision deficiency
1 gene
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1 of 1 corroborated by 2+ sources
MAB21L2(2)
0.001 1.000 6.27e-2 6.42e-2 —
Color vision deficiency dilated cardiomyopathy 2B
1 gene
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1 of 1 corroborated by 2+ sources
GATAD1(2)
0.001 1.000 6.27e-2 6.42e-2 —
Color vision deficiency MEGF8-related Carpenter syndrome
1 gene
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1 of 1 corroborated by 2+ sources
MEGF8(2)
0.001 1.000 6.27e-2 6.42e-2 —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.