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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Delirium, dementia, and cognitive disorders ornithine carbamoyltransferase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
OTC(2)
0.018 1.000 3.64e-3 4.67e-3 ✓ sig. —
Clonal hematopoiesis skeletal dysplasia, mild, with joint laxity and advanced bone age
1 gene
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1 of 1 corroborated by 2+ sources
0.018 1.000 3.64e-3 4.67e-3 ✓ sig. —
Bell's palsy spermatogenic failure 46
1 gene
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1 of 1 corroborated by 2+ sources
DNAH8(2)
0.018 1.000 3.64e-3 4.67e-3 ✓ sig. —
Atrophic macular degeneration Cerebellar vermis atrophy
1 gene
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1 of 1 corroborated by 2+ sources
SYN3(2)
0.018 1.000 3.64e-3 4.67e-3 ✓ sig. —
Chops syndrome Delirium, dementia, and cognitive disorders
1 gene
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1 of 1 corroborated by 2+ sources
AFF4(3)
0.018 1.000 3.64e-3 4.67e-3 ✓ sig. —
Cognitive impairment-coarse facies-heart defects-obesity-pulmonary involvement-short stature-skeletal dysplasia syndrome Delirium, dementia, and cognitive disorders
1 gene
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1 of 1 corroborated by 2+ sources
AFF4(4)
0.018 1.000 3.64e-3 4.67e-3 ✓ sig. —
Atrophic macular degeneration BARD1-related cancer predisposition
1 gene
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1 of 1 corroborated by 2+ sources
BARD1(2)
0.018 1.000 3.64e-3 4.67e-3 ✓ sig. —
Jarcho-levin syndrome Mayer-rokitansky-kuster-hauser syndrome
1 gene
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1 of 1 corroborated by 2+ sources
TBX6(2)
0.067 0.143 3.63e-3 4.67e-3 ✓ sig. —
Chondromalacia Peritonitis
1 gene
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0.067 0.143 3.63e-3 4.67e-3 ✓ sig. —
Connective tissue neoplasm Pemphigus vulgaris
1 gene
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THSD7B(1)
0.067 0.143 3.63e-3 4.67e-3 ✓ sig. —
Machado-joseph disease Pemphigus vulgaris
1 gene
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THSD7B(1)
0.067 0.143 3.63e-3 4.67e-3 ✓ sig. —
Duodenitis Gallbladder disease
1 gene
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1 of 1 corroborated by 2+ sources
ABCG8(4)
0.067 0.143 3.63e-3 4.67e-3 ✓ sig. —
Endocrine system disease Parathyroid disease
1 gene
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1 of 1 corroborated by 2+ sources
EBF2(3)
0.056 0.250 3.63e-3 4.67e-3 ✓ sig. —
Anophthalmia Male reproductive system disease
1 gene
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1 of 1 corroborated by 2+ sources
WNT7B(2)
0.056 0.250 3.63e-3 4.67e-3 ✓ sig. —
Obstructive azoospermia Spermatogenic failure, y-linked
1 gene
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CFTR(1)
0.056 0.250 3.63e-3 4.67e-3 ✓ sig. —
Congenital hydrocephalus Cryptospermia
1 gene
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1 of 1 corroborated by 2+ sources
TRIM71(4)
0.056 0.250 3.63e-3 4.67e-3 ✓ sig. Cluster 293 →
Houge janssens syndrome Papillary thyroid cancer
1 gene
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1 of 1 corroborated by 2+ sources
PPP2R5C(2)
0.056 0.250 3.63e-3 4.67e-3 ✓ sig. —
Hepatic veno occlusive disease with immunodeficiency Lymphoid leukemia
1 gene
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1 of 1 corroborated by 2+ sources
SP140(2)
0.033 0.500 3.63e-3 4.67e-3 ✓ sig. Cluster 225 →
2,4-dienoyl-coa reductase deficiency Multinodular goiter
1 gene
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1 of 1 corroborated by 2+ sources
NADK2(4)
0.033 0.500 3.63e-3 4.67e-3 ✓ sig. —
Acid-base disorder Oral cavity carcinoma
1 gene
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ADH1B(1)
0.033 0.500 3.63e-3 4.67e-3 ✓ sig. —
Multinodular goiter Urofacial syndrome
1 gene
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1 of 1 corroborated by 2+ sources
HPSE2(5)
0.033 0.500 3.63e-3 4.67e-3 ✓ sig. —
Encephalopathy due to mitochondrial and peroxisomal fission defect Exostoses
1 gene
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1 of 1 corroborated by 2+ sources
MFF(2)
0.033 0.500 3.63e-3 4.67e-3 ✓ sig. —
Parapsoriasis Scleroderma
1 gene
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1 of 1 corroborated by 2+ sources
HLA-A(2)
0.033 0.500 3.63e-3 4.67e-3 ✓ sig. —
Cerebellar ataxia, neuropathy, and vestibular areflexia Hereditary parkinson disease
1 gene
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1 of 1 corroborated by 2+ sources
RFC1(3)
0.033 0.500 3.63e-3 4.67e-3 ✓ sig. —
Cerebellar, ocular, craniofacial, and genital syndrome Diverticulitis
1 gene
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1 of 1 corroborated by 2+ sources
NBEA(2)
0.033 0.500 3.63e-3 4.67e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.