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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Breast cancer NTHL1-deficiency tumor predisposition syndrome
1 gene
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1 of 1 corroborated by 2+ sources
NTHL1(2)
0.001 1.000 6.92e-2 7.06e-2 —
Breast cancer platelet-type bleeding disorder 20
1 gene
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1 of 1 corroborated by 2+ sources
SLFN14(2)
0.001 1.000 6.92e-2 7.06e-2 —
Breast cancer C3hex olfactory ability
1 gene
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1 of 1 corroborated by 2+ sources
OR2J3(2)
0.001 1.000 6.92e-2 7.06e-2 Cluster 20 →
Breast cancer scalp-ear-nipple syndrome
1 gene
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1 of 1 corroborated by 2+ sources
KCTD1(2)
0.001 1.000 6.92e-2 7.06e-2 —
Breast cancer Curly hair ankyloblepharon nail dysplasia syndrome
1 gene
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1 of 1 corroborated by 2+ sources
RIPK4(3)
0.001 1.000 6.92e-2 7.06e-2 —
Breast cancer GPR161-related medulloblastoma predisposition
1 gene
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1 of 1 corroborated by 2+ sources
GPR161(2)
0.001 1.000 6.92e-2 7.06e-2 —
Breast cancer glycosylphosphatidylinositol biosynthesis defect 17
1 gene
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1 of 1 corroborated by 2+ sources
PIGH(2)
0.001 1.000 6.92e-2 7.06e-2 —
Breast cancer Thrombocytopenia with platelet secretion defect
1 gene
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1 of 1 corroborated by 2+ sources
SLFN14(3)
0.001 1.000 6.92e-2 7.06e-2 —
Breast cancer thrombotic disease
1 gene
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1 of 1 corroborated by 2+ sources
MAST2(2)
0.001 1.000 6.92e-2 7.06e-2 —
Breast cancer tooth agenesis, selective, 3
1 gene
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1 of 1 corroborated by 2+ sources
PAX9(2)
0.001 1.000 6.92e-2 7.06e-2 —
Acyl-coa binding domain containing protein 5 deficiency Breast cancer
1 gene
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1 of 1 corroborated by 2+ sources
ACBD5(3)
0.001 1.000 6.92e-2 7.06e-2 —
Breast cancer Congenital cataract severe neonatal hepatopathy developmental delay syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CYP51A1(3)
0.001 1.000 6.92e-2 7.06e-2 —
Nephronophthisis-like nephropathy Parkinson disease
1 gene
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1 of 1 corroborated by 2+ sources
SLC41A1(4)
0.002 0.500 6.75e-2 6.90e-2 —
3-methylcrotonyl-coa carboxylase deficiency Parkinson disease
1 gene
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1 of 1 corroborated by 2+ sources
MCCC1(5)
0.002 0.500 6.75e-2 6.90e-2 Cluster 2 →
Brody myopathy Parkinson disease
1 gene
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1 of 1 corroborated by 2+ sources
RABEP2(2)
0.002 0.500 6.75e-2 6.90e-2 —
Parkinson disease Thyroid hemiagenesis
1 gene
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1 of 1 corroborated by 2+ sources
VPS13C(6)
0.002 0.500 6.75e-2 6.90e-2 —
Scoliosis Webb-dattani syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ARNT2(5)
0.001 1.000 6.71e-2 6.85e-2 —
Autoinflammatory disease, systemic, with vasculitis Scoliosis
1 gene
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1 of 1 corroborated by 2+ sources
LYN(4)
0.001 1.000 6.71e-2 6.85e-2 —
primary ciliary dyskinesia 19 Scoliosis
1 gene
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1 of 1 corroborated by 2+ sources
DNAAF11(2)
0.001 1.000 6.71e-2 6.85e-2 —
Partial deletion of short arm of chromosome 3 Scoliosis
1 gene
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1 of 1 corroborated by 2+ sources
CHL1(2)
0.001 1.000 6.71e-2 6.85e-2 Cluster 2 →
Cerebrofacial arteriovenous metameric syndrome Scoliosis
1 gene
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1 of 1 corroborated by 2+ sources
GNA14(2)
0.001 1.000 6.71e-2 6.85e-2 —
hermansky-pudlak syndrome 5 Scoliosis
1 gene
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1 of 1 corroborated by 2+ sources
HPS5(2)
0.001 1.000 6.71e-2 6.85e-2 —
Hypervalinemia Scoliosis
1 gene
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1 of 1 corroborated by 2+ sources
BCAT2(5)
0.001 1.000 6.71e-2 6.85e-2 —
Borderline personality disorder Scoliosis
1 gene
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TPH1(1)
0.001 1.000 6.71e-2 6.85e-2 —
optic atrophy 11 Scoliosis
1 gene
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1 of 1 corroborated by 2+ sources
YME1L1(2)
0.001 1.000 6.71e-2 6.85e-2 —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.