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Gene Gene information from NCBI Gene database.
Entrez ID 4067
Gene name LYN proto-oncogene, Src family tyrosine kinase
Gene symbol LYN
Synonyms (NCBI Gene)
JTK8SAIDVp53Lynp56Lyn
Chromosome 8
Chromosome location 8q12.1
Summary This gene encodes a tyrosine protein kinase, which maybe involved in the regulation of mast cell degranulation, and erythroid differentiation. Alternatively spliced transcript variants encoding different isoforms have been found for this gene. [provided b
miRNA miRNA information provided by mirtarbase database.
117 Show/Hide all (117)
miRTarBase ID miRNA Experiments Reference
MIRT046575 hsa-miR-222-3p CLASH 23622248
MIRT322915 hsa-miR-32-3p PAR-CLIP 20371350
MIRT322916 hsa-miR-4731-3p PAR-CLIP 20371350
MIRT322917 hsa-miR-4801 PAR-CLIP 20371350
MIRT570814 hsa-miR-4789-3p PAR-CLIP 20371350
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
205 Show/Hide all (205)
GO ID Ontology Definition Evidence Reference
GO:0000077 Process DNA damage checkpoint signaling IDA 10891478
GO:0000166 Function Nucleotide binding IEA
GO:0000902 Process Cell morphogenesis IEA
GO:0001782 Process B cell homeostasis IEA
GO:0001782 Process B cell homeostasis ISS
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
165120 6735 ENSG00000254087
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
P07948
Protein name Tyrosine-protein kinase Lyn (EC 2.7.10.2) (Lck/Yes-related novel protein tyrosine kinase) (V-yes-1 Yamaguchi sarcoma viral related oncogene homolog) (p53Lyn) (p56Lyn)
Protein function Non-receptor tyrosine-protein kinase that transmits signals from cell surface receptors and plays an important role in the regulation of innate and adaptive immune responses, hematopoiesis, responses to growth factors and cytokines, integrin sig
PDB 1W1F , 1WA7 , 3A4O , 5XY1 , 6NMW , 8WFF
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00017 SH2 129 → 211 SH2 domain Domain
PF00018 SH3_1 69 → 115 SH3 domain Domain
PF07714 PK_Tyr_Ser-Thr 247 → 497 Protein tyrosine and serine/threonine kinase Domain
Tissue specificity TISSUE SPECIFICITY: Detected in monocytes (at protein level). Detected in placenta, and in fetal brain, lung, liver and kidney. Widely expressed in a variety of organs, tissues, and cell types such as epidermoid, hematopoietic, and neuronal cells. Express
Sequence
Sequence length 512
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
KEGG Pathway Reactome Pathway
Chemokine signaling pathway GPVI-mediated activation cascade
NF-kappa B signaling pathway Signaling by SCF-KIT
Platelet activation Regulation of KIT signaling
B cell receptor signaling pathway Cell surface interactions at the vascular wall
Fc epsilon RI signaling pathway FCGR activation
Fc gamma R-mediated phagocytosis PECAM1 interactions
Long-term depression Fc epsilon receptor (FCERI) signaling
Epithelial cell signaling in Helicobacter pylori infection Role of LAT2/NTAL/LAB on calcium mobilization
Kaposi sarcoma-associated herpesvirus infection FCERI mediated MAPK activation
Epstein-Barr virus infection FCERI mediated Ca+2 mobilization
Viral carcinogenesis FCERI mediated NF-kB activation
Lipid and atherosclerosis CD28 co-stimulation
  CTLA4 inhibitory signaling
  EPHB-mediated forward signaling
  EPHA-mediated growth cone collapse
  EPH-ephrin mediated repulsion of cells
  Dectin-2 family
  CD209 (DC-SIGN) signaling
  CD22 mediated BCR regulation
  Cyclin D associated events in G1
  Platelet Adhesion to exposed collagen
  Erythropoietin activates Phosphoinositide-3-kinase (PI3K)
  Erythropoietin activates RAS
  Regulation of signaling by CBL
  FCGR3A-mediated IL10 synthesis
  FCGR3A-mediated phagocytosis
  Growth hormone receptor signaling
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
8
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Autoinflammatory disease, systemic, with vasculitis Pathogenic rs2486900565, rs1585690632, rs2486900588, rs2486900574 RCV003228812
RCV003228884
RCV003228813
RCV003228743
★★★★★
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
LYN kinase associated vasculopathy and liver fibrosis syndrome Pathogenic rs2486900565, rs1585690632, rs2486900588 RCV002512493
RCV002512494
RCV002512495
★★★★★
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Show/Hide Unknown Diseases (6)
Phenotype Name Clinical Significance Source Reference Evidence Score
HYPERTENSION — GWAS catalog 28498854
★★★★★
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
IGA GLOMERULONEPHRITIS — GWAS catalog 37337107
★★★★★
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
INSOMNIA — GWAS catalog 35835914
★★★★★
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
LYN-related disorder Benign; Likely benign; Uncertain significance ClinVar —
★★★★★
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
SCOLIOSIS — GWAS catalog 30019117
★★★★★
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Show/Hide Text Mining Associations (111)
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Acute lymphocytic leukemia Lymphocytic Leukemia BEFREE 16029452
★★★★★
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma Adenocarcinoma BEFREE 27756880
★★★★★
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma of lung (disorder) Lung adenocarcinoma BEFREE 27756880
★★★★★
★☆☆☆☆
Found in Text Mining only
Anovulation Anovulation Pubtator 40287692 Associate
★★★★★
★☆☆☆☆
Found in Text Mining only
Atherosclerosis Atherosclerosis Pubtator 28260035, 34122426 Associate
★★★★★
★☆☆☆☆
Found in Text Mining only
Autoimmune Diseases Autoimmune disease Pubtator 36215934, 36267464 Associate
★★★★★
★☆☆☆☆
Found in Text Mining only
B-Cell Lymphomas B-Cell Lymphoma LHGDN 16568084
★★★★★
★☆☆☆☆
Found in Text Mining only
Bone Resorption Bone resorption Pubtator 9844106 Associate
★★★★★
★☆☆☆☆
Found in Text Mining only
Brain Ischemia Brain ischemia Pubtator 33460396 Associate
★★★★★
★☆☆☆☆
Found in Text Mining only
Breast Carcinoma Breast Carcinoma BEFREE 20215510, 25401474, 30590041
★★★★★
★☆☆☆☆
Found in Text Mining only