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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Mouth neoplasms Vertical talus
1 gene
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1 of 1 corroborated by 2+ sources
HOXD10(2)
0.016 1.000 4.09e-3 5.16e-3 ✓ sig. —
Carpal tunnel syndrome Woolly hair-palmoplantar keratoderma syndrome
1 gene
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1 of 1 corroborated by 2+ sources
KANK2(4)
0.016 1.000 4.09e-3 5.16e-3 ✓ sig. —
Carpal tunnel syndrome Schmid metaphyseal chondrodysplasia
1 gene
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1 of 1 corroborated by 2+ sources
COL10A1(2)
0.016 1.000 4.09e-3 5.16e-3 ✓ sig. —
Brugada syndrome dilated cardiomyopathy 1JJ
1 gene
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1 of 1 corroborated by 2+ sources
LAMA4(2)
0.016 1.000 4.09e-3 5.16e-3 ✓ sig. Cluster 4 →
Conotruncal cardiac defect neonatal/infantile epilepsy syndrome
1 gene
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1 of 1 corroborated by 2+ sources
KCNH5(2)
0.016 1.000 4.09e-3 5.16e-3 ✓ sig. —
Brugada syndrome Neurodevelopmental disorder with dilated cardiomyopathy
1 gene
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1 of 1 corroborated by 2+ sources
CAMK2D(2)
0.016 1.000 4.09e-3 5.16e-3 ✓ sig. —
Hmg-coa synthase deficiency Mouth neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
HMGCS2(3)
0.016 1.000 4.09e-3 5.16e-3 ✓ sig. Cluster 5 →
Brugada syndrome hypokalemic alkalosis, familial, with specific renal tubulopathy
1 gene
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1 of 1 corroborated by 2+ sources
KCNJ16(2)
0.016 1.000 4.09e-3 5.16e-3 ✓ sig. Cluster 4 →
Beta thalassemia Dias-logan syndrome
1 gene
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1 of 1 corroborated by 2+ sources
BCL11A(4)
0.042 0.333 4.09e-3 5.16e-3 ✓ sig. —
Brain malformations Congenital anomalies of kidney and urinary tract
1 gene
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SON(1)
0.042 0.333 4.09e-3 5.16e-3 ✓ sig. —
Male infertility testicular dysgenesis Postaxial polydactyly
1 gene
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KIF7(1)
0.042 0.333 4.09e-3 5.16e-3 ✓ sig. —
Distal renal tubular acidosis Hypomaturation amelogenesis imperfecta
1 gene
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1 of 1 corroborated by 2+ sources
WDR72(2)
0.063 0.143 4.09e-3 5.16e-3 ✓ sig. —
Androgenetic alopecia Appendiceal disorder
2 genes
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MND1(1), TMEM131L(1)
0.005 0.500 4.06e-3 5.12e-3 ✓ sig. —
Aortic aneurysm aortic valve disease 3
1 gene
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1 of 1 corroborated by 2+ sources
ROBO4(2)
0.016 1.000 4.03e-3 5.09e-3 ✓ sig. —
Cystic fibrosis immunodeficiency 97 with autoinflammation
1 gene
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1 of 1 corroborated by 2+ sources
PIK3CG(2)
0.016 1.000 4.03e-3 5.09e-3 ✓ sig. —
Intestinal dysmotility syndrome Moyamoya disease
1 gene
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1 of 1 corroborated by 2+ sources
ANO1(5)
0.016 1.000 4.03e-3 5.09e-3 ✓ sig. —
Charcot-Marie-Tooth disease type 4B2 Moyamoya disease
1 gene
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1 of 1 corroborated by 2+ sources
SBF2(2)
0.016 1.000 4.03e-3 5.09e-3 ✓ sig. —
glutaric acidemia type 3 Moyamoya disease
1 gene
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1 of 1 corroborated by 2+ sources
SUGCT(2)
0.016 1.000 4.03e-3 5.09e-3 ✓ sig. —
Aortic aneurysm Growth restriction, hypoplastic kidneys, alopecia, and distinctive facies
1 gene
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1 of 1 corroborated by 2+ sources
ZPR1(4)
0.016 1.000 4.03e-3 5.09e-3 ✓ sig. —
autosomal dominant cerebellar ataxia Moyamoya disease
1 gene
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1 of 1 corroborated by 2+ sources
NPTX1(2)
0.016 1.000 4.03e-3 5.09e-3 ✓ sig. —
Cystic fibrosis POLE-related polyposis and colorectal cancer syndrome
1 gene
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1 of 1 corroborated by 2+ sources
POLE(2)
0.016 1.000 4.03e-3 5.09e-3 ✓ sig. —
microcephalic osteodysplastic primordial dwarfism type II Moyamoya disease
1 gene
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1 of 1 corroborated by 2+ sources
PCNT(3)
0.016 1.000 4.03e-3 5.09e-3 ✓ sig. —
Aortic aneurysm Urinary bladder dysfunction
1 gene
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1 of 1 corroborated by 2+ sources
CHRNA3(3)
0.016 1.000 4.03e-3 5.09e-3 ✓ sig. —
Aortic aneurysm Winchester syndrome
1 gene
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1 of 1 corroborated by 2+ sources
MMP14(5)
0.016 1.000 4.03e-3 5.09e-3 ✓ sig. —
Cystic fibrosis systemic lupus erythematosus, susceptibility to, 1
1 gene
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1 of 1 corroborated by 2+ sources
TLR5(2)
0.016 1.000 4.03e-3 5.09e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.