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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
hermansky-pudlak syndrome 4 Interstitial lung disease
1 gene
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1 of 1 corroborated by 2+ sources
HPS4(2)
0.015 1.000 4.29e-3 5.38e-3 ✓ sig. —
hermansky-pudlak syndrome 7 Interstitial lung disease
1 gene
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1 of 1 corroborated by 2+ sources
DTNBP1(2)
0.015 1.000 4.29e-3 5.38e-3 ✓ sig. —
Atopic dermatitis hyper-ige syndrome 6, autosomal dominant, with recurrent infections
1 gene
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1 of 1 corroborated by 2+ sources
STAT6(3)
0.015 1.000 4.29e-3 5.38e-3 ✓ sig. Cluster 16 →
Atopic dermatitis Ichthyosis vulgaris
1 gene
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1 of 1 corroborated by 2+ sources
FLG(4)
0.015 1.000 4.29e-3 5.38e-3 ✓ sig. —
Atopic dermatitis combined immunodeficiency due to DOCK8 deficiency
1 gene
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1 of 1 corroborated by 2+ sources
DOCK8(2)
0.015 1.000 4.29e-3 5.38e-3 ✓ sig. —
Congenital absence of breast with absent nipple Left ventricular disease
1 gene
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PTPRF(1)
0.015 1.000 4.29e-3 5.38e-3 ✓ sig. —
Congenital cataract microcephaly intellectual disability syndrome Hereditary motor and sensory neuropathies
1 gene
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1 of 1 corroborated by 2+ sources
MED25(2)
0.015 1.000 4.29e-3 5.38e-3 ✓ sig. —
Cavitary optic disc anomalies Interstitial lung disease
1 gene
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1 of 1 corroborated by 2+ sources
MMP19(3)
0.015 1.000 4.29e-3 5.38e-3 ✓ sig. —
Charcot-Marie-Tooth disease axonal type 2CC Hereditary motor and sensory neuropathies
1 gene
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1 of 1 corroborated by 2+ sources
NEFH(2)
0.015 1.000 4.29e-3 5.38e-3 ✓ sig. —
Charcot-Marie-Tooth disease axonal type 2P Hereditary motor and sensory neuropathies
1 gene
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1 of 1 corroborated by 2+ sources
LRSAM1(2)
0.015 1.000 4.29e-3 5.38e-3 ✓ sig. Cluster 15 →
Charcot-Marie-Tooth disease axonal type 2Z Hereditary motor and sensory neuropathies
1 gene
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1 of 1 corroborated by 2+ sources
MORC2(2)
0.015 1.000 4.29e-3 5.38e-3 ✓ sig. —
familial isolated arrhythmogenic right ventricular dysplasia Left ventricular disease
1 gene
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1 of 1 corroborated by 2+ sources
DSC2(2)
0.015 1.000 4.29e-3 5.38e-3 ✓ sig. Cluster 4 →
exostoses, multiple, type 1 Generalized epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
EXT1(2)
0.015 1.000 4.22e-3 5.32e-3 ✓ sig. —
Generalized epilepsy Glutaminase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
GLS(4)
0.015 1.000 4.22e-3 5.32e-3 ✓ sig. —
Axonal neuropathy Generalized epilepsy
1 gene
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GBF1(1)
0.015 1.000 4.22e-3 5.32e-3 ✓ sig. —
Casgid syndrome Generalized epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
GLS(2)
0.015 1.000 4.22e-3 5.32e-3 ✓ sig. —
Generalized epilepsy infantile cataract, skin abnormalities, glutamate excess, and impaired intellectual development
1 gene
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1 of 1 corroborated by 2+ sources
GLS(2)
0.015 1.000 4.22e-3 5.32e-3 ✓ sig. —
neurodevelopmental disorder with language impairment and behavioral abnormalities Rhinitis
1 gene
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1 of 1 corroborated by 2+ sources
GRIA2(3)
0.015 1.000 4.22e-3 5.32e-3 ✓ sig. —
Generalized epilepsy hermansky-pudlak syndrome 4
1 gene
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1 of 1 corroborated by 2+ sources
HPS4(2)
0.015 1.000 4.22e-3 5.32e-3 ✓ sig. —
Byzanthine arch palate Malocclusion
1 gene
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PTK2(1)
0.056 0.200 4.21e-3 5.31e-3 ✓ sig. —
Hyperuricemia lesch-nyhan syndrome
1 gene
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1 of 1 corroborated by 2+ sources
HPRT1(4)
0.015 1.000 4.16e-3 5.24e-3 ✓ sig. —
Dalmatian hypouricemia Hyperuricemia
1 gene
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1 of 1 corroborated by 2+ sources
0.015 1.000 4.16e-3 5.24e-3 ✓ sig. Cluster 178 →
Kawasaki disease thrombocytopenia 10
1 gene
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1 of 1 corroborated by 2+ sources
PTPRJ(2)
0.015 1.000 4.16e-3 5.24e-3 ✓ sig. —
Kawasaki disease Vici syndrome
1 gene
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1 of 1 corroborated by 2+ sources
EPG5(5)
0.015 1.000 4.16e-3 5.24e-3 ✓ sig. —
Hyperuricemia renal dysplasia, cystic, susceptibility to
1 gene
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1 of 1 corroborated by 2+ sources
BICC1(2)
0.015 1.000 4.16e-3 5.24e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.