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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Bone remodeling disease Parenchymal hematoma
1 gene
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PDZRN4(1)
0.056 0.167 4.67e-3 5.79e-3 ✓ sig. —
Lennox-gastaut syndrome Synovial disorder
1 gene
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1 of 1 corroborated by 2+ sources
GABRB3(3)
0.056 0.167 4.67e-3 5.79e-3 ✓ sig. Cluster 47 →
Thyrotoxic periodic paralysis Trigeminal nerve disease
1 gene
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DCHS2(1)
0.056 0.167 4.67e-3 5.79e-3 ✓ sig. —
complex neurodevelopmental disorder with motor features Specific learning disability
1 gene
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1 of 1 corroborated by 2+ sources
KMT2B(2)
0.056 0.167 4.67e-3 5.79e-3 ✓ sig. —
Anal polyp Hydronephrosis
1 gene
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1 of 1 corroborated by 2+ sources
PTGES(3)
0.056 0.167 4.67e-3 5.79e-3 ✓ sig. —
Intellectual developmental disorder dysmorphic facial Uranostaphyloschisis
1 gene
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1 of 1 corroborated by 2+ sources
SETD5(3)
0.037 0.333 4.67e-3 5.79e-3 ✓ sig. —
Autoimmune thrombocytopenic purpura Juvenile parkinsonism
1 gene
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1 of 1 corroborated by 2+ sources
DNAJC6(3)
0.037 0.333 4.67e-3 5.79e-3 ✓ sig. —
Hemorrhage Juvenile parkinsonism
1 gene
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1 of 1 corroborated by 2+ sources
PODXL(4)
0.037 0.333 4.67e-3 5.79e-3 ✓ sig. —
Autoimmune thrombocytopenic purpura Juvenile-onset diabetes mellitus-central and peripheral neurodegeneration syndrome
1 gene
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1 of 1 corroborated by 2+ sources
DNAJC6(2)
0.037 0.333 4.67e-3 5.79e-3 ✓ sig. —
Benign adult familial myoclonic epilepsy Myoclonic epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
SAMD12(2)
0.037 0.333 4.67e-3 5.79e-3 ✓ sig. —
Encephalitis Peroxisome biogenesis disorder
1 gene
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ABCD1(1)
0.037 0.333 4.67e-3 5.79e-3 ✓ sig. —
Hereditary atrial fibrillation Throat disease
1 gene
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1 of 1 corroborated by 2+ sources
GATA5(2)
0.037 0.333 4.67e-3 5.79e-3 ✓ sig. —
Distal hereditary motor neuropathy Testis atrophy
1 gene
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1 of 1 corroborated by 2+ sources
PLEKHG5(3)
0.026 0.500 4.67e-3 5.79e-3 ✓ sig. —
Intellectual developmental disorder dysmorphic microcephaly syndromic intellectual disability
1 gene
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1 of 1 corroborated by 2+ sources
CTCF(3)
0.026 0.500 4.67e-3 5.79e-3 ✓ sig. —
Proliferative diabetic retinopathy Temple syndrome
1 gene
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1 of 1 corroborated by 2+ sources
DLK1(3)
0.026 0.500 4.67e-3 5.79e-3 ✓ sig. —
17q24.2 microdeletion syndrome syndromic intellectual disability
1 gene
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1 of 1 corroborated by 2+ sources
BPTF(3)
0.026 0.500 4.67e-3 5.79e-3 ✓ sig. —
Anosmia Moyamoya angiopathy
1 gene
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1 of 1 corroborated by 2+ sources
TENM1(2)
0.026 0.500 4.67e-3 5.79e-3 ✓ sig. —
Microphthalmia with retinitis pigmentosa and ocular anomalies Microphthalmos
1 gene
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1 of 1 corroborated by 2+ sources
MFRP(2)
0.026 0.500 4.67e-3 5.79e-3 ✓ sig. Cluster 56 →
Developmental delay with or without intellectual or behavioral abnormalities syndromic intellectual disability
1 gene
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1 of 1 corroborated by 2+ sources
TAOK1(4)
0.026 0.500 4.67e-3 5.79e-3 ✓ sig. —
Dubowitz syndrome syndromic intellectual disability
1 gene
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1 of 1 corroborated by 2+ sources
NSUN2(3)
0.026 0.500 4.67e-3 5.79e-3 ✓ sig. —
Cerebellar hypoplasia/atrophy, epilepsy, and global developmental delay Duplication 15q11-q13 syndrome
1 gene
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AUTS2(1)
0.026 0.500 4.67e-3 5.79e-3 ✓ sig. —
Early-onset progressive encephalopathy-hearing loss-pons hypoplasia-brain atrophy syndrome Ventricular fibrillation
1 gene
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LIPT2(1)
0.026 0.500 4.67e-3 5.79e-3 ✓ sig. —
Cone rod dystrophy and hearing loss Moyamoya angiopathy
1 gene
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1 of 1 corroborated by 2+ sources
CEP78(5)
0.026 0.500 4.67e-3 5.79e-3 ✓ sig. —
Congenital anosmia Moyamoya angiopathy
1 gene
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TENM1(1)
0.026 0.500 4.67e-3 5.79e-3 ✓ sig. —
Cystic leukoencephalopathy Smooth surface dental caries
1 gene
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1 of 1 corroborated by 2+ sources
RNASET2(4)
0.026 0.500 4.67e-3 5.79e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.